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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaaatacatatatatcttatttttaaatgtcctaaattttaaaactgttgatgaatagtagtagtggtccaacaatagtgagctgacaatcaa...

Basic information

species Glycine max
transcript GLYMA16G02860.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G02860.2 (Glycine max), 5'ss of exon 8
lower sequence: AT2G46420.1 (Arabidopsis thaliana), 5'ss of exon 8
ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaaatacatatatatcttatttttaaatgtcctaaattttaaaactg--ttgatgaatagtagtagtggtccaacaatagtgag-ctgacaatcaa-------------------------------
|| |||| ||| | ||||||||||| ||||| || ||| |||||||||||||||| ||||| || || ||||| || ||| |||| ||||||||   | |   |  |    |||   | | ||| || | |  || ||| | ||  ||||  |    |  ||  | |  || | |     | |  |  ||||                                
ATTTAGGGGCTTTAGGAAACTATCCCGGTTCTCCTTTTCTGCCATCTGATTCAGAGATTTTACTTGACTCTCCCGAACAAGAGGACATAGgtaaacattagctctcac---tctccatctaaaaggtgcaatcttataagaatggtttgaacatggatgttatagatttaaaagtttcatgtcctatgatcactaaccaatatcttcgtttctgtatcccgtag

upper sequence: GLYMA16G02860.2 (Glycine max), 5'ss of exon 8
lower sequence: AT3G61700.2 (Arabidopsis thaliana), 5'ss of exon 8
----------ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaaata---catatatatcttatttttaaatgtcctaaattttaaaactgttgatgaatagtagtagtggtccaac-aatagtgagctgacaatcaa
          || |||||||  | ||||||||||| || || |||||| | |||||||||||||| ||||| || || |||||||| ||| |||| ||||||| | |   ||    ||  | |   |  |  |    | ||   | | || || | | |  ||||   |||   |||| |||  |||| | |  ||| || | |
TATGTTGCAGATTTAGGAGCCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGgtactctcttatttttcaactcttcttcttcctccggtttcactagtcttgaatcagat--tgaac--tagatttggtacaatgaataataaattgaaaaccca

upper sequence: GLYMA16G02860.2 (Glycine max), 5'ss of exon 8
lower sequence: AT3G61700.1 (Arabidopsis thaliana), 5'ss of exon 8
ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaaata---catatatatcttatttttaaatgtcctaaattttaaaactgttgatgaatagtagtagtggtccaac-aatagtgagctgacaatcaa
|| |||||||  | ||||||||||| || || |||||| | |||||||||||||| ||||| || || |||||||| ||| |||| ||||||| | |   ||    ||  | |   |  |  |    | ||   | | || || | | |  ||||   |||   |||| |||  |||| | |  ||| || | |
ATTTAGGAGCCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGgtactctcttatttttcaactcttcttcttcctccggtttcactagtcttgaatcagat--tgaac--tagatttggtacaatgaataataaattgaaaaccca

upper sequence: GLYMA16G02860.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 8
ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaaat-acatatatatcttatttttaaatgtcctaaattttaaaactgttgatgaatagtagtagtggtccaacaat--agtgagctgacaatcaa
||||||||||| |||||||||| || ||||| || ||| ||   |||||||||||||||||||| || ||||| || ||| |||||||||||||| | ||||  ||| | | || ||||||    | ||  | | |  |||             |  |    || |     |    | ||   ||   || | 
ATCTAGGAGCTTTGGGAAACTACCCCGGTTCTCCCTTTCTGGGTTCTGATTCAGACATTTTGCTTGATTCTCCGGAGCAAGAGGATATAGgtaatttgaaattgcatctctgtcctattttc---tttctcacaatgcaaattctccatctgggaagacacatgattttgtatctaaatggaatggttataag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193654990|gb|FK598702.1|FK598702
EST:     AGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: AGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|6482602|gb|AW201847.1|AW201847
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTG
EST: gi|22928262|gb|BU545401.1|BU545401
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|22928383|gb|BU545522.1|BU545522
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|9564325|gb|BE473834.1|BE473834
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|58020902|gb|CX707644.1|CX707644
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|193648973|gb|FK597496.1|FK597496
EST:     AGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: AGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|58020559|gb|CX707301.1|CX707301
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|58020730|gb|CX707472.1|CX707472
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG