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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCATGCTCTTCGCTTGTTCTCACCTCGCCTTGCAGTTGTTGATGAACATCTGACTCGACACTTACCTAGGCAGTGGTTAACATCTTCAACCCTTGAGgtatggaatagcatgccttgatcttttttgaatttgattaatattctgttttgtctgtattgttatcccaatgtgttgaagaaatgcagttatgtgaaca...

Basic information

species Glycine max
transcript GLYMA16G00210.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0035g01920.t01 (Vitis vinifera), 5'ss of exon 9
TGAGCATGCTCTTCGCTTGTTCTCACCTCGCCTTGCAGTTGTTGATGAACATCTGACTCGACACTTACCTAGGCAGTGGTTAACATCTTCAACCCTTGAGgtatggaatagcatgccttgatcttttttgaatttgattaatattctgttttgtctgtattgttatcccaatgtgttgaagaaatgcagt-tatgtgaaca--
|||| |||||||||| || |||||||| || |||||| ||||||||||| |||||||||||||  | || || |||||||||||||| |  |   ||||||||||   ||   ||   |  |||| |   | ||||  |  |  | |||     ||  |   | ||    || | || |  ||||  | |  |  |  |||  
TGAGAATGCTCTTCGATTATTCTCACCCCGTCTTGCAATTGTTGATGAAGATCTGACTCGACATCTTCCAAGACAGTGGTTAACATCCTTGAAAATTGAGgtatgccctaatttgttatactcttat---actttgtatttttatatgtccaagcttcaccatgattttgatttttttactaaattgattgcacattcacata

upper sequence: GLYMA16G00210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0035g02060.t01 (Vitis vinifera), 5'ss of exon 1
TGAGCATGCTCTTCGCTTGTTCTCACCTCGCCTTGCAGTTGTTGATGAACATCTGACTCGACACTTACCTAGGCAGTGGTTAACATCTTCAACCCTTGAGgtatggaatagcatgccttgatctt---ttttgaatttgattaatattctgttttgtctgtattgttatcccaatgtgttgaagaaatgcagttatgtgaaca-
|||| |||||||||  || |||||||| || |||||| |||||||||||||||||||| ||||  | || || |||||||||||||| |  |   ||||||||||| |||   |||  || ||||    |||| ||||  |  || | |    ||  |  |  | |||      | | |||  | | |  | |||| || ||| 
TGAGAATGCTCTTCAATTATTCTCACCCCGTCTTGCAATTGTTGATGAACATCTGACTTGACATCTTCCAAGACAGTGGTTAACATCCTTGAAAATTGAGgtatggcataatttgcaatgctcttatactttgtatttt-tatatgtccaagcttcaccatgattttaatttttttttttg--gtactaaatttat-tgcacat