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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtctttgactatactagttgccattaattggctgcacatagtttatgagaataactgcatcacgaacaacttattcaacctatgttgattatttta...

Basic information

species Glycine max
transcript GLYMA15G40060.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40060.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 8
GTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt--gactatactagt-tgccattaattggctgcacatagttt-atgagaataactgcatcacgaacaacttattcaacctatgttgattatttta
|||   ||||||||||| || ||||| || |||||||| || || || |||||||| |||||||||||||| ||| | |  |||  |  |    |        ||| |     | | ||| || ||  |   || |  |      |    |||    | | |  || |||   
GTTTCTCGCCTGAGGCTTTTAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATGgtgagtttgtatgacagtgttgacatattcaggcttgcccagttacatttttattaggcttgttg-aggatacttgatagtttctgtttttatctataatt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254314632|gb|GR829625.1|GR829625
EST:     TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
genomic: TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
EST: gi|7588858|gb|AW704644.1|AW704644
EST:     TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
genomic: TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
EST: gi|58020690|gb|CX707432.1|CX707432
EST:     TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
genomic: TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
EST: gi|19053081|gb|BM731748.1|BM731748
EST:     TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
genomic: TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
EST: gi|151403013|gb|EV272826.1|EV272826
EST:     TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
genomic: TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
EST: gi|14989895|gb|BI315576.1|BI315576
EST:     TGNGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTC
genomic: TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTC
EST: gi|208250786|gb|GE047781.1|GE047781
EST:     GGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
genomic: GGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
EST: gi|193698363|gb|FK638986.1|FK638986
EST:     GGAATTTGCAATG                         GCTGAAAGTGCTATTAATTGCACTAAACTGTAGTGGGATGCTCTTGGGGAC
genomic: GGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATT-ATTGCACTAAACTGTAGTGGGATGCTCTTGGGGAC
EST: gi|193583619|gb|FK541087.1|FK541087
EST:     GGAATTTGCAATG                         GCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
genomic: GGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
EST: gi|58020886|gb|CX707628.1|CX707628
EST:     TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
genomic: TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
EST: gi|19270477|gb|BM886733.1|BM886733
EST:     TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGAAAGTGCTATTATTGCACTAAACTGTAGTG
genomic: TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTG
EST: gi|58020497|gb|CX707239.1|CX707239
EST:     TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
genomic: TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
EST: gi|298191171|gb|HO038650.1|HO038650
EST:     TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGAAAGTGCTATTATTACACTAAACTGTAGTGGGATGCTCTTGGGGACC
genomic: TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
EST: gi|8284333|gb|BE021892.1|BE021892
EST:     TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG                         GCTGANAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC
genomic: TGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaagtcttt ... tcttgagcagGCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACC