Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAAAATTGGTGAGTGGAGATTTGATAAAAGGTCACATCTACGAGGACCTCCACCAAAAAACTTGCCCTTGCCCCCACCAGGGGTTCCTGAAAGTGTGgtatgtctagaacttgcctattgattgaagtgcacttcatcctatcttattggaataatatctagaaagaactgctttctgtgatacatggaacttgata...

Basic information

species Glycine max
transcript GLYMA15G37490.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G37490.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G055020_T03 (Zea mays), 5'ss of exon 8
TGGCAAAATTGGTGAGTGGAGATTTGATAAAAGGTCACATCTACGAGGACCTCCACCAAAAAACTTGCCCTTGCCCCCACCAGGGGTTCCTGAAAGTGTGgtatgtctagaacttgcctattgattgaagtgcacttcatcctatcttattggaataatatctagaaagaactgctttctgtgatacatggaacttgata--
||| ||||| ||||| ||| | ||||| ||||| ||  | || | |   || ||||||| |||  |  |  ||||||| ||||| |||||||||||||||||||||  |  | |       || | |     ||  |  | ||   || ||   ||||    | |      |   ||| | ||| |  |   |  || |   
TGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCTTACCTTCAATCTCCACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaacaatattgcgatgttagggaaacatgttgttct--tttgtttctataaatgattggtttttcatgtttatatgaaaattaagaactgtttgt

upper sequence: GLYMA15G37490.2 (Glycine max), 5'ss of exon 8
lower sequence: AT5G13500.3 (Arabidopsis thaliana), 5'ss of exon 8
TGGCAAAATTGGTGAGTGGAGATTTGATAAAAGGTCACATCTACGAGGACCTCCACCAAAAAACTTGCCCTTGCCCCCACCAGGGGTTCCTGAAAGTGTGgtatgtctagaacttgcctat-tgattgaagtgcacttcatcctatcttattggaataatatctagaaagaactgctttctgtgat-acatggaacttgata
||||||||| || |||||| |||| ||||| || |||||| | || || ||||| ||||  ||| || ||||||| || || || ||||| |||||||||||||||     |    ||| | | ||   |  |  ||| |  | |   || || | |||  || |   | | ||       |   | |  || | | ||   
TGGCAAAATAGGAGAGTGGCGATTCGATAAGAGATCACATTTGCGGGGTCCTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTGTGgtatgttatatataaacctctataatctgatcgtgcttaaaac-aagatactgcagtaaggtccattcatagctcaaaggggaacttatttgtatcatgtc-

upper sequence: GLYMA15G37490.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 7
TGGCAAAATTGGTGAGTGGAGATTTGATAAAAGGTCACATCTACGAGGACCTCCACCAAAAAACTTGCCCTTGCCCCCACCAGGGGTTCCTGAAAGTGTGgtatgtctagaac--ttgcctattgattgaagtgcacttcatcctatcttattggaataatatctagaaagaactgctttctgtgatacatggaacttgata
||| |||||||| |||||| ||||||| || || ||| | ||||| |||||||| || | |||| |  ||||||| || |||||||||||||||||||||||||||  |       | | |     || |  | || ||  ||| || |     |  || |  | |   |   | | || |  ||  | || |    |  | 
TGGGAAAATTGGAGAGTGGCGATTTGACAAGAGATCATACCTACGTGGACCTCCTCCTAGAAACCTTTCCTTGCCGCCTCCAGGGGTTCCTGAAAGTGTGgtatgttcatggtgactccttcacatttcatataca-ttgttcccatgtatgctgtctacttacaattgaagtcagattccactggca-attgtttatactg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719634|gb|AW307281.1|AW307281
EST:     CTCCACCAAAAAACTTGCCCTTGCCCCCACCAGGGGTTCCTGAAAGTGTG                         GTAACCCTTGTAAAGATGGTGAACGAGGCTAGTGCTAACATTCCAAATTGG
genomic: CTCCACCAAAAAACTTGCCCTTGCCCCCACCAGGGGTTCCTGAAAGTGTGgtatgtctag ... acgtatgcagGTAACCCTTGTAAAGATGGTGAACGAGGCTAGTGCTAACATTCCAAATTGG