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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGTTCCTCCCGGTGCACGATTTGATCCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttcaaggacatcatgtgttccatacaagtatattgcactaatgacgtcatttacatgtttaacccttgtacatcttttatgtattgttctctcg...

Basic information

species Glycine max
transcript GLYMA15G17840.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G17840.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0007g01340.t01 (Vitis vinifera), 5'ss of exon 8
GGGTGTTCCTCCCGGTGCACGATTTGATCCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttcaaggacatcatg--tgttccatacaagtatattgcactaatgacgtcatttacatgtttaacccttgta---catcttttatgtattgttctctcg
 |||||||| || ||||| ||||||||||| ||||| || ||||| |||||||||||||| || || | |||| | ||||||  || ||  |  | ||   | |||  | |   | | ||   ||  |   ||    || |||  | | |    ||   ||  |  |||| |   |  |    
AGGTGTTCCACCTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCCTGGTTTTGAGCCTAATAGATTTACCAGgtatttttaaacaaattgattccttttcttttcctttgttttttcctttttgggtttgcta-atgactgaactaaataactcaattgctatggaaaataat----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23728829|gb|BU762478.1|BU762478
EST:     CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: gi|57574625|gb|CX547600.1|CX547600
EST:     CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: gi|31465370|gb|CD407398.1|CD407398
EST:     GGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTGGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: GGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: gi|15204141|gb|BI426909.1|BI426909
EST:     CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: gi|31308353|gb|CD393556.1|CD393556
EST:     CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: gi|15813617|gb|BI785892.1|BI785892
EST:     CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: gi|31310074|gb|CD395277.1|CD395277
EST:     CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG