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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAGgtcaaatctccgtttcattagtaatttttctggactgaatatttcagcagttacttgactccatcaaataacaggctactaaaatacatgatattgtatttag

Basic information

species Glycine max
transcript GLYMA15G15960.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15960.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g21990.1 (Oryza sativa), 5'ss of exon 10
GTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAGgtcaaatctccgtttcattagtaatttttctggactgaatatttcagcagttacttgactccatcaaataacaggctactaaaatacatgatattgtatttag
| |||||||| ||| |  | || || ||  | || |||||||||||||| |||||||| || |||||||| |||||||| || ||||| |  |    |||  ||     |||    |  || |   || |  ||| |  | | ||    |            |  |||                     
GGCTTGCTGTGAGCCAACGGCACACATATTTATTTTCTGCTGGTGATGACAAACAAGTAAAGTGTTGGGATCTTGAACAAAACAAGgttagcttatagttcgatgta-gattgcagtatacagggcatattggcattatcgtaacattttgtttcttttcatttttaag--------------------

upper sequence: GLYMA15G15960.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G017089_T02 (Zea mays), 5'ss of exon 8
GTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAGgtcaaatctccgtttcattagtaatttttctggactgaatatttcagcagttacttgactccatcaaataacaggctactaaaatacatgatattgtatttag
| |||||||| ||| |  | || |||||  | || |||||||||||||| |||||||| ||||||||||| |||||||| || ||||| |  | | | ||| | ||     | || |||   | ||              |||||| |     | | | |     || | |  ||| ||  |       
GACTTGCTGTCAGCCAACGTCACACTTATTTATTTTCTGCTGGTGATGACAAACAAGTAAAATGTTGGGATCTTGAACAAAACAAGgttagttttac-tttaagtatggtgtattttgggtggcat-------------tttgacttctcttgacatctgatctgtatattctatgttaaag-------

upper sequence: GLYMA15G15960.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S402_49V6.1 (Physcomitrella patens), 5'ss of exon 8
GTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAGgtcaaatctccgtttcattagtaatttttctggactgaatatttcagcagttacttgac---tccatcaaataacaggctactaaaatacatgatattgtatttag------------------------
| ||||| || |||  | | ||| ||||  | ||||| ||||||||||| ||||| || ||||||||||| |||||| | ||||||||    ||   | ||         || ||       | ||   | |  ||||  |  |    || || ||   |    |||     ||  ||      | || |                          
GCCTTGCAGTGAGCGCCCGGCATCCTTATTTATTCTCAGCTGGTGATGACAAACAGGTCAAATGTTGGGATCTTGAATACAATAAGgt-gtgtccaggcttttacgacgcttgttggttgtagcatccgtaattagttcatgaatgtgtctatgaatccatgtactatatgtatttatcgctgaggatctttgctctggtgtattggtttgtgcag

upper sequence: GLYMA15G15960.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S169_73V6.2 (Physcomitrella patens), 5'ss of exon 8
GTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAGgtcaaatct----ccgttt-----cattagtaatttttctggactgaatatt---tcagcagttactt--gactccatcaaataacaggctactaaaatacatgatattgtatttag
|||| || || ||     ||||| |||||||||| || |||||||||||||| ||||| ||||| ||||| |||||  | || |||||    |||    || |||      |||| |   |   ||  |||      |   ||||  || | ||   |   |||    | | |  |||||     | |||   |||   | ||
GTCTCGCAGTGAGTGCTCGACATCCTTACATGTTTTCAGCTGGTGATGATAAGCAAGTCAAATGCTGGGATCTTGAGTACAACAAGgtgtgttctggctccttttaagcatattaatgcgtagcctttacttggctctgagtcagaggtcatttcaaatgtcattttctgagactctactctgggatatgggtttgc--tcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37994708|gb|CF806333.1|CF806333
EST:     CTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAG                         GTTATTAGATCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTT
genomic: CTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAGgtcaaatctc ... ttgtatttagGTTATTAGATCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTT
EST: gi|5752551|gb|AI959838.1|AI959838
EST:     CTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAG                         GTTATTAGATCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTT
genomic: CTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAGgtcaaatctc ... ttgtatttagGTTATTAGATCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTT
EST: gi|10254053|gb|BE821819.1|BE821819
EST:     CTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAG                         GTTATTAGATCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTT
genomic: CTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAGgtcaaatctc ... ttgtatttagGTTATTAGATCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTT