1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGCATGTGCATTGCTCATGGCGGGTGAGGATCTTGACAACCATGTTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatactttgttataggtttgacctcttggctttctttagagatccttttgactctagaatgctgtctgtatgtctacatattgccctcatcagctataaatattttttaaaaactgtattataacctatcttttctctatccttttcccctctcattttag
species | Glycine max |
transcript | GLYMA15G12780.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG GATGATTATTTGGATTGTTTTGGTGATCCTCANACAATTGGANAGEST: gi|7926518|gb|AW832544.1|AW832544
genomic: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatacttt ... ctcattttagGATGATTATTTGGATTGTTTTGGTGATCCTCAAACAATTGGAAAG
EST: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG GATGATTATTTGGATTGTTTTGGTGATCCTCAAACAATTGGAAAGEST: gi|9565120|gb|BE474629.1|BE474629
genomic: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatacttt ... ctcattttagGATGATTATTTGGATTGTTTTGGTGATCCTCAAACAATTGGAAAG
EST: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG GATGATTATTTGGATTGTTNTGGTGATCCTCAAACAATTGGAAAGEST: gi|193615774|gb|FK561987.1|FK561987
genomic: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatacttt ... ctcattttagGATGATTATTTGGATTGTTTTGGTGATCCTCAAACAATTGGAAAG
EST: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG GATGATTATTTGGATTGTTTTGGTGATCCTCAAACAATTGGAAAGEST: gi|193453892|gb|FK421201.1|FK421201
genomic: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatacttt ... ctcattttagGATGATTATTTGGATTGTTTTGGTGATCCTCAAACAATTGGAAAG
EST: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG GATGATTATTTGGATTGTTTTGGTGATCCTCAAACAATTG
genomic: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatacttt ... ctcattttagGATGATTATTTGGATTGTTTTGGTGATCCTCAAACAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCATGTGCATTGCTCATGGCGGGTGAGGATCTTGACAACCATGTTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatactttgttataggtttgacctcttggctttctttagagatccttttgactctagaatgctgtctgtatgtctacatattgccctcatcagctataaatattttttaaaaactgtattataacctatcttttctctatccttttcccctctcattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG