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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCTGCCAACCAACATAAGCCAGCTGATATCGTCAGTATATTTGTTGCGAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatgtcatctctggatagtttagttgctttttatggtatcaattatcagtttctcattcatgatcacatgtgtgttgtgattgtgcag

Basic information

species Glycine max
transcript GLYMA15G12220.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14991297|gb|BI316970.1|BI316970
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|31463880|gb|CD405908.1|CD405908
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|21994680|gb|BQ786208.1|BQ786208
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|22932404|gb|BU549543.1|BU549543
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|23734444|gb|BU765448.1|BU765448
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|31474015|gb|CD416043.1|CD416043
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|13312864|gb|BG406515.1|BG406515
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|22928039|gb|BU545178.1|BU545178
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|13479119|gb|BG508462.1|BG508462
EST:     GCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|9901558|gb|BE610526.1|BE610526
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|193352433|gb|FK316829.1|FK316829
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGAT
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGAT
EST: gi|254318122|gb|GR832290.1|GR832290
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|6724491|gb|AW308890.1|AW308890
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACCAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|33389396|gb|CA852603.1|CA852603
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGCTGCCAACCAACATAAGCCAGCTGATATCGTCAGTATATTTGTTGCGAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatgtcatctctggatagtttagttgctttttatggtatcaattatcagtttctcattcatgatcacatgtgtgttgtgattgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA