Sequence
atgc intronic sequence ATGC exonic sequenceCTCGAGATATTCAGGCATGGGAATATATTCCTCTTGGTCCTTTTCTTGGCAAGAGTTTTGgtaagatgtttcaaacaattacttaatatcttttaagtcctaattgaaaaaagctgggcatttggacttgtgcagtatatccaacatggatgattgcatgtgccatttgctctagacagaaaccatcaccttttggtcattattttagagttaatcttcctttatggtgctaactataattatacag
Basic information
species | Glycine max |
transcript | GLYMA15G12100.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G12100.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G12050.1 (Arabidopsis thaliana), 5'ss of exon 8
CTCGAGATATTCAGGCATGGGAATATATTCCTCTTGGTCCTTTTCTTGGCAAGAGTTTTGgtaagatgtttcaaacaattacttaatatcttttaagtcctaattgaaaaaagctgggcatttggacttgtgcagtatatccaacatggatg-attgcatgtgccatttgctctagacagaaaccatcaccttttggtcattattttagagttaatcttcctttatggtgctaactataattatacag
|| | ||||||||||| ||||| ||| | |||||||||||||| || || |||||||||||| |||| ||| | ||||| || | | ||| ||||| | |||||| | |||| | || || | | || ||| |
CTAGGGATATTCAGGCGTGGGAGTATGTACCTCTTGGTCCTTTCCTGGGGAAGAGTTTTGgtgagatatttggcttcaatactttg-atttcatttcctctagttgaagtata-tgggcaaa-gaactt---cggtgaatgttgtcttgttgtgttgtag----------------------------------------------------------------------------------------
upper sequence: GLYMA15G12100.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0187g00300.t01 (Vitis vinifera), 5'ss of exon 5
CTCGAGATATTCAGGCATGGGAATATATTCCTCTTGGTCCTTTTCTTGGCAAGAGTTTTGgtaagatgtttcaaaca-attacttaatatcttttaagtcctaattgaaaaaagctgggcatttggacttgtgcagtatatccaacatggatgattgcatgtgccatttgctctagacagaaaccatcaccttttggtcattattttagagttaatcttcctttatggtgctaactataattatacag
| ||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||| || | ||| ||| ||| |||| || ||| | || | | | | || || | | | ||| || || | ||| || |||
CAAGAGATATTCAGGCATGGGAATATGTGCCTCTTGGGCCTTTTCTTGGGAAGAGTTTTGgtaagaagtcatatttttattgcttcata-ctttcaattcc------------atttagcctctaggttcttgtagcaga---atcatacatttttatcttggcct----ctttag------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5676815|gb|AI937945.1|AI937945EST: TCAGGCATGGGAATATATTCCTCTTGGTCCTTTTCTTGGCAAGAGTTTTG GAACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
genomic: TCAGGCATGGGAATATATTCCTCTTGGTCCTTTTCTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGAACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCGAGATATTCAGGCATGGGAATATATTCCTCTTGGTCCTTTTCTTGGCAAGAGTTTTGgtaagatgtttcaaacaattacttaatatcttttaagtcctaattgaaaaaagctgggcatttggacttgtgcagtatatccaacatggatgattgcatgtgccatttgctctagacagaaaccatcaccttttggtcattattttagagttaatcttcctttatggtgctaactataattatacag
- - - - - - - - - - - - - - - - - - - - - - - - GCAAGA