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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATCCAGgtaggttaagttcttgactatctactcatttacattgtagtaatttcttcattcataaaattgatgaccggattgattcatgatgctaactctttgtgtag

Basic information

species Glycine max
transcript GLYMA15G11970.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11970.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 9
AACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATCCAGgta----ggttaagttcttgactatctactcatttacattg--tagtaatttcttcattc-------ataaaattg---atgaccggattgattcatgatgctaactctttgtgtag---
| || |||||| ||||| || |||||||||||| | || ||||| ||||| ||||||||||| ||||| ||||| |||||  | ||     ||||||||||||    || | |  | |||  |  ||  || ||   ||||   | ||  || | |||||       | | | ||     |||    | ||   ||  ||   |  | ||| | | |   
AGCAGTGATTTCGATGCGAAGCCAATGGTCATGTTGCTGGGTCAGTATTCCACAGGAAAAACCACATTCATAAAGCATTTACTGAAGACAAATTATCCAGgtaaacaggatgaaatattgtgttccttttccttcttattgagaattatattttccattctctttctacacattttcccttgaaaaaaatgtaacaatatctgagttgtttctcttgcag

upper sequence: GLYMA15G11970.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 9
AACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATCCAGgtaggttaagttcttgactatctactcatttacattgtagtaatttcttcattcataaaattgatgaccgg-attgat-tcatgatgctaactctttgtgtag
|  |  ||||||||||| ||||||||||| |||||| | ||||||||||| || |||||||| |||||||||||||| ||| |   |||||| || |||||||  ||   || ||  ||  ||| || |    | || |   | | ||||| | ||  |  ||||   |   ||||   || || ||  |             
AGTAGCGATTTTGATGCCAAACCAATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCTCGGATGTGACTACCCAGgtaacttgctttgtttcct--ctaatcctagcaaatgcaaggaat-cttcagttatctatctgatcttcaccattgtcctcttgttgtcag------------

upper sequence: GLYMA15G11970.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 5'ss of exon 10
AACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATCCAGgtaggttaagttcttgactatctactcatttacattgtagtaatttcttcattcataaaattgatgaccggattgattcatgatgctaactctttgtgtag
 | | ||| |||||||| ||||| ||||| |||||| | ||||| |||||||| || ||||||||||| |||||||||||  |   |||| |||  ||||||| || || ||  ||  | |||  || |     ||  ||| |   ||   |    | ||||  |       | | ||  |  | |   || ||||  |||
CATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCCCAGgtaagtaaactttctg--tttctgttcttccctttttcagttacaactagttgagaacaatt--tcgtttcttggcttactatttccttctttttggatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193588616|gb|FK540056.1|FK540056
EST:     AAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATCCAG                         GAGCACACGTCGGACCAGAACCTACCACTGATAGATTTGTTGTTGTCATGT
genomic: AAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATCCAGgtaggttaag ... ctttgtgtagGAGCACACGTCGGACCAGAACCTACCACTGATAGATTTGTTGTTGTCATGT