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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGGATCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGGCAAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaattttctgttactatttttttgaattgttcctttcttctttgtccattgttcttttatcttgtcaaattccaatatagaaaaatccctttatctgctttggaattgccaactctgctgatttgttgctgtgcatgcag

Basic information

species Glycine max
transcript GLYMA15G10940.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10940.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 8
CTGTGGATCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGGCAAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaattttctgttactatttttttgaattgttcctttcttctttgtccattgttcttttat-cttgtcaaattccaatatagaaaaatccctttatctg-ctttggaattgccaactctgctgatttgttgctgtgcatgcag
|||| || || |||||||| ||||| || || || |||||||| ||||| || || | |||||||||||| |||||||| ||||||||||||||||| |||||||| | | | | ||| | ||||| | || | || ||| | | | | | | ||||||| | | | | | || | || |||| ||| |
CTGTTGACCAGTTCAAGAAGCAATTCGCTTACCTCGAGGAGCACTACGGAAATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccg---tcttagcaattatctatttgacatactcttatccattttttttggtatcacctgctgcctgtcaaagttgggtgttaatcaggccactaatgaaattttgtgattacag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208281278|gb|GE073706.1|GE073706
EST:     GGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG                         ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGATTGC
genomic: GGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: gi|193556186|gb|FK511451.1|FK511451
EST:     GGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG                         ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
genomic: GGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: gi|207816288|gb|GD789229.1|GD789229
EST:     GGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG                         ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
genomic: GGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: gi|208154656|gb|GD958075.1|GD958075
EST:     GGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACTGAG                         ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
genomic: GGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: gi|193721194|gb|FK660352.1|FK660352
EST:     AAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG                         ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
genomic: AAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: gi|193511261|gb|FK468474.1|FK468474
EST:     CTCCGCCCTGAGAGGCAACATGCATCATTACCGAG                         ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
genomic: CTCCG-CCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: gi|208273209|gb|GE070103.1|GE070103
EST:     AAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG                         ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
genomic: AAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: gi|193720858|gb|FK659022.1|FK659022
EST:     GGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG                         ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
genomic: GGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: gi|207797416|gb|GD771214.1|GD771214
EST:     GGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG                         ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
genomic: GGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: gi|193348349|gb|FK309557.1|FK309557
EST:     AAGGGGGAACGTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG                         ACCTTGTGTGTTGTATTCAGACCACTCGATGCAGAACACATCTGAGGTTGC
genomic: AAGGGGGAAC-TGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: gi|193497429|gb|FK458281.1|FK458281
EST:     GGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG                         ACCTTGTGTGTTGTATTCAGATCACTCAATGCAGAACACATCTGAGGTTGC
genomic: GGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGTGGATCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGGCAAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaattttctgttactatttttttgaattgttcctttcttctttgtccattgttcttttatcttgtcaaattccaatatagaaaaatccctttatctgctttggaattgccaactctgctgatttgttgctgtgcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG