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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAAGTTGATCAGAGAAAAGGCACTTCAAGTAACAATGAAGCATATTCATTATGAAAATGAAAATAGTCGATATTTAGATATGGCGTGCGTGGAAAAGgtatgctacataaatactaaaacatattattttccaatatatgttaattgaaatgttactaacatttttatttttttcttaattgcacttttttatcctt...

Basic information

species Glycine max
transcript GLYMA15G10870.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10870.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0054g01230.t01 (Vitis vinifera), 5'ss of exon 7
---GAACAAGTTGATCAGAGAAAAGGCACTTCAAGTAACAATGAAGCATATTCATTATGAAAATGAAAATAGTCGATATTTAGATATGGCGTGCGTGGAAAAGgta--tgctacataaatactaaaacatattattttccaatatatgttaattgaaatgttactaacatttttatttttttcttaattgcacttttttatcctt
    ||||||||||   || | ||||| ||| ||||||||||||| || || ||||||||| ||||||| ||||||||  |    || |  || ||||| ||||||  |  |    ||    |||    ||||        |||| | ||  |||   || || ||    ||  |||   |                        
CTTCAACAAGTTGA---GAAAGAAGGCTCTTGAAGTAACAATGAAACACATCCATTATGAAGATGAAAACAGTCGATACATTACCATTGGATGTGTGGAGAAGgtaatttttctgcaatggataatgtctattcagacagtatatctcttctttggggtgctaatatggcttaaattgaatag----------------------

upper sequence: GLYMA15G10870.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0054g01360.t01 (Vitis vinifera), 5'ss of exon 5
---GAACAAGTTGATCAGAGAAAAGGCACTTCAAGTAACAATGAAGCATATTCATTATGAAAATGAAAATAGTCGATATTTAGATATGGCGTGCGTGGAAAAGgtatgctacataaatactaaaacatattattttccaatatatgttaattgaaatgttactaacatttttatttttttcttaattgcacttttttatcctt
    ||||||||||   || | ||||| ||| ||||||||||||| || || ||||||||| ||||||| ||||||||  ||   || |  || ||||  |||||||  |   | | || |  |  ||     ||   |  |||||| | |        |  |    |  | || |   | | ||||| ||            
CTTCAACAAGTTGA---GACAGAAGGCTCTTGAAGTAACAATGAAACACATCCATTATGAAGATGAAAACAGTCGATACATAACCATTGGATGTGTGGCGAAGgtat--tttttcagtaatggataatgactattcagacaatatgtcactc------cttttggggtactgatatccct-taaattgaacag----------

upper sequence: GLYMA15G10870.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0054g01410.t01 (Vitis vinifera), 5'ss of exon 7
GAACAAGTTGATCAGAGAAAAGGCACTTCAAGTAACAATGAAGCATATTCATTATGAAAATGAAAATAGTCGATATTTAGATATGGCGTGCGTGGAAAAGgtatgctacataaatactaaaacatattattttccaatatatgttaattgaaatgttactaacatttttatttttttcttaattgcacttttttatcctt
   |||   | | ||| | ||||| ||| ||||||||||||| || || ||||||||| ||||||| ||||||||  |    || |  || ||||| |||||||  |   | | || |  |  ||     ||   |  |||||| | ||      ||      | |  |||   |   | ||||| ||            
CTTCAAAAAGTTGAGAAAGAAGGCTCTTGAAGTAACAATGAAACACATCCATTATGAAGATGAAAACAGTCGATACATTACCATTGGATGTGTGGAGAAGgtat--tttttcagtaatggataatgactattcagacaatatgtcacttc-----tttggggtactgatatcgct---taaattgaacag----------

upper sequence: GLYMA15G10870.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0054g01280.t01 (Vitis vinifera), 5'ss of exon 3
---GAACAAGTTGATCAGAGAAAAGGCACTTCAAGTAACAATGAAGCATATTCATTATGAAAATGAAAATAGTCGATATTTAGATATGGCGTGCGTGGAAAAGgtatgctacataaatactaaaacatattattttccaatatatgttaattgaa-atgttactaacatttttatttttttcttaattgcacttttttatcctt
    ||||||||||   || | ||||| ||| ||||||||||||| || || ||||||||| ||||||| ||||||||  |    || |  |   || | ||||||   |   | | || |  |  ||     ||   |  |||||| | ||      | |||| | ||   |         | ||||| ||            
CTTCAACAAGTTGA---GAAAGAAGGCTCTTGAAGTAACAATGAAACACATCCATTATGAAGATGAAAACAGTCGATACATTACCATTGGATATATGAAGAAGgtaaatt--ttcagtaatggataatgactattcagacaatatgtcacttctgtggggtactgagatcgct---------taaattgaacag----------

upper sequence: GLYMA15G10870.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0054g01220.t01 (Vitis vinifera), 5'ss of exon 7
---GAACAAGTTGATCAGAGAAAAGGCACTTCAAGTAACAATGAAGCATATTCATTATGAAAATGAAAATAGTCGATATTTAGATATGGCGTGCGTGGAAAAGgtatgctacataaatactaaaacatattattttccaatatatg--ttaattgaaatgttactaacatttttatttttttcttaattgcacttttttatcctt
    ||||||||||   || | ||||| ||| ||||||||||||| || || ||||||||| ||||||| ||||||||  |    || |  || ||||| ||||||   |   |  |    | ||  | |  |    || |||||   ||  |||   || || ||    ||  |||                            
CTTCAACAAGTTGA---GACAGAAGGCTCTTGAAGTAACAATGAAACACATCCATTATGAAGATGAAAACAGTCGATACATTACCATTGGATGTGTGGAGAAGgtaatttttctgcaatggataatgtctgttcagacagtatatcacttctttggggtgctaatatggcttaaattgaacag----------------------

upper sequence: GLYMA15G10870.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0054g01520.t01 (Vitis vinifera), 5'ss of exon 11
---GAACAAGTTGATCAGAGAAAAGGCACTTCAAGTAACAATGAAGCATATTCATTATGAAAATGAAAATAGTCGATATTTAGATATGGCGTGCGTGGAAAAGgtatgctacataaatactaaaacatattattttccaatatatg--ttaattgaaatgttactaacatttttatttttttcttaattgcacttttttatcctt
    ||||||||||   || | ||||| ||| ||||||||||||| || || ||||||||| ||||||| ||||||||  |    || |  || ||||| |||||||  |   |  |    | ||  | |  |    || |||||   ||  |||   || || ||    ||  |||                            
CTTTAACAAGTTGA---GACAGAAGGCTCTTGAAGTAACAATGAAACACATCCATTATGAAGATGAAAACAGTCGATACATTACCATTGGATGTGTGGAGAAGgtattttttctgcaatggataatgtctgttcagacagtatatcacttctttggggtgctaatatggcttaaattgaacag----------------------