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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttgatgttaatctggcacataattgtcattttcattttctatgtatatcaag

Basic information

species Glycine max
transcript GLYMA15G10370.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttgatgttaatctggcacataattgtcattttcattt-tctatgtatatcaag----
  |  |||| ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||  | || ||||| | | | | |||  ||   || |   |||       || |  |||| ||| ||| |  ||     ||||||  | ||  |   || |     
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataac--tcccatgctcaatggctcattatgctaataatttgggaca-acctgcatagttcattcatgtaaattcttctatgaag

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgtaa---attacagaaccttcttttgattgttggaagtccttgatgttaatctggcacataattgtcattttcattttctatgtatatcaag
  |  |||| ||||| ||||| |||||||| ||||||||||| ||||| |||||||| || |||||||||||||| || |||||||| ||  | || |||||||   |||  | | || | || | |   |||  ||  | || || |  ||      || |||    |   ||| ||  |  |  |     
CTTGTTGCCTGAAATATTTAGCTCTGCTGAGACTTTTGATGATTGGTTCCAAATCTCAGGGGAAAATGATCAACATGAAGTTGTTCAGCAGCTTCATAAGgtaacagatttgatatccatattctca--attgatagatcatgttggttttcct-tgtatgatttgtgtaa-catgttacacttgaag----

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 8
lower sequence: AC235535.1_FGT001 (Zea mays), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttc-ttttgattgttggaagtccttgatgttaatctggcacataattgtcattttcattttctatgtatatcaag
  | || || ||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||| || || ||  | || |||||     | | ||   || |  | | |  |   ||| ||| |   | | ||   | ||||||||   || ||  || |    |       
CTTGCTCCCTGAAATATTTAGCTCTGCGGAAACCTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAACAGGAGGTGGTCCAGCAGCTTCATAAGgttggg-atataattatcatgataactaattatagtactttaaaatgaactctta-ataattgtttcttgcaacttttgcaaag------

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 5
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgt-aaattacagaaccttcttttgattgttggaagtccttgatgttaatctggcacataattgtcattttcattttctatgtatatcaag
  | || || ||||| ||||| ||||| || || |||||||||||||||||||| ||||| |||||||||||||||||||| || || ||  | || |||||     || ||         |      ||  |   |||| |  | ||        ||||||||   |  ||  || |    |       
CTTGCTACCTGAAATATTTAGCTCTGCGGAGACCTTTGATGAATGGTTTCAAATATCTGGGGAAAATGATCAACAGGAGGTGGTGCAGCAGCTTCATAAGgttgggatatagttttcgtgatcaccaattttagtaccttaaaatgaactc--tttataattgtttctcgcaacttttgcaaag------

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttgg--aagtccttgatgttaatctggcacataattgtcattttcattttctatgtatatcaag
|||||| || ||  |||||||||| || ||||||||||| || ||||||||||| ||||||||||| || || || || |||||||||||| | |||||||||  |      |  || |   | || ||    |||| ||| ||| |||||    || | ||  |  |                       
TCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGTTTCAAATTTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGgtatgtactcatattttatcaaggttattctctaagttctt-atgctaatcatttacctcatctttgtag---------------------

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttgatgttaatctggcacataattgtcattttcattttctatgtatatcaag
||||||||| || ||||||||||| || || ||||||||||||||||||||||| |||||||| ||||| || || || ||||| |||||| | |||||||||    |   | || |   |||    |||    |  |   | |   | ||   | ||   || | || | |||  | | | | |  ||
TCTTCTGCCTGAGATTTTTAGTTCAGCAGAGACTTTTGATGAATGGTTTCAAATTTCTGGTGAGAATGACCAGCAAGAAGTTGTGCAACAACTGCACAAGgtatgg-atgcacccattccttg--cattgagtttattctgt-tctgtgtgagtcgtag--gttaattgc-tttcatgtatctttttag

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttgatgttaatctggcacataattgtcattttcattttctatgtatatcaag
||| |||||||| || |||| ||| ||||| ||||||||||||||||| ||||| ||||| || ||||| || |||||||||||||||||  | || ||||||||   ||  |||| ||  |  || || |   | | | || || ||||     |      |  |||   | ||   ||| | | |  
TCTACTGCCCGAGATATTTAATTCAGCTGAGACTTTTGATGAATGGTTCCAAATTTCTGGAGATAATGACCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtaaacc-caagacctcctaat--tttttagctctaccttat-ttcatctcatttactgaaatggtttctgtatttc-tgttttttag-

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ31365 (Selaginella moellendorffii), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgtaaat-tacagaacct-tcttttgattgttggaagtccttgatgttaatctggcacataattgtcattttcattttctatgtatatcaag
||| ||||||||||| ||||| |||||||| || ||||| || |||||||| || ||||| ||||||||||| ||||||||  |||| ||| | |||||||||  | | ||| |  | |   |  |   |  | |   |||  | | |                                           
TCTCCTGCCCGAAATCTTTAGCTCTGCTGAGACCTTTGACGAGTGGTTTCAGATTTCTGGAGAAAATGATCAGCAGGAGGTCATTCAGCAACTTCACAAGgtacttatccagcatttataaatcaaccatgagtaacactttttctcag------------------------------------------

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ32950 (Selaginella moellendorffii), 5'ss of exon 7
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttgatgttaatctggcacataattgtcattttcattttctatgtatatcaag
||| ||||| || ||||| || ||||||||||| || || |||||||||||||| ||||| ||||| || || || || ||||| || ||  | |||||||||      ||  |  |    | || || |        ||||  | || |                                       
TCTGCTGCCGGAGATTTTCAGCTCTGCTGAAACATTCGACGAATGGTTTCAAATATCTGGCGAAAACGACCAGCAAGAAGTTGTGCAGCAGCTTCACAAGgtatgaatgagcgctatgcgct-atcgtcga----tgctgataatgatttacag-----------------------------------

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ15818 (Selaginella moellendorffii), 5'ss of exon 7
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttgatgttaatctggcacataattgtcattttcattttctatgtatatcaag
||| ||||| || ||||| || ||||||||||| || || |||||||||||||| ||||| ||||| || || || || ||||| || ||  | |||||||||      ||  |  |    | || || |        ||||  | || |  ||                                   
TCTGCTGCCGGAGATTTTCAGCTCTGCTGAAACATTCGACGAATGGTTTCAAATATCTGGCGAAAACGACCAGCAAGAAGTTGTGCAGCAGCTTCACAAGgtatgaatgagcgctatgcgct-atcgtcga----tgctgataatgattttacag----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207797664|gb|GD771476.1|GD771476
EST:     AAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAG                         GTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAAGG
genomic: AAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattaca ... gtatatcaagGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAA-GG