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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCAAAAAGACTACTGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGgttagggtttttctttctcatttaacttcagaaataattaatcgattcttcacataagttttagtaatattaaaagttttctttcattaatacag

Basic information

species Glycine max
transcript GLYMA15G10030.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 8
lower sequence: AT5G46210.1 (Arabidopsis thaliana), 5'ss of exon 8
CAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCAAAAAGACTACTGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGgttag-----ggtttttctttctcat-ttaacttcagaaataattaatcgattcttcacataagttttagtaat--attaaaagttttctttcattaatacag
 || |||||||| || |||||||| || || |||||||| || ||||| ||||| |||||||||||||| || ||||| |||||||| |||||||| |||||||      | ||| | ||     | ||  | |     | ||||  |    | |     ||  | | |   |   ||   ||  ||  ||| |    |||||
TAAAGATGTGTTCGAAGCATTTTACAAAAAGGATCTTGCGAAGAGACTCCTGTTGGGAAAGAGTGCTTCAATCGATGCTGAGAAATCCATGATCTCTAAGgttaaaaactgatttatattctgggtgtttccctttcccacaatttgttttctatatctgtagttctcacccactgatcccaaccttggttttacc--tacag

upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 8
CAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCAAAAAGACTACTGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGgttagggtttttctttctcatttaacttcagaaataattaatcgattcttcacataagttttagtaatattaaaagttttctttcattaatacag
 ||||||||||| || |||||||| ||||| ||||| |||||||| |||||||| || |||||||| || |||||||||||||| || |||||| | ||||| | || |    | | |      | | |     |||||      || || | ||    | |     || ||  |  |||   |||| | |||||
TAAGGATGTGTTCGAAGCATTTTACAAGAAGGATCTGGCAAAAAGGCTACTGTTGGGGAAGAGTGCATCAATTGATGCAGAGAAGTCAATGATCACTAAGgtgaaggatagattgtttgtagctattcctt--gtaatt------ttttttatatgttgtctgtccttactagcaagttttcctcataattacag

upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S70_181V6.1 (Physcomitrella patens), 5'ss of exon 8
CAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCAAAAAGACTACTGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGgttagg--gtttttctttctcatttaacttcagaa-ataattaatcgattcttcacataagttttagtaatattaaaagttttctttcattaatacag---
 || ||||| ||||| || || || ||||| |||||||| ||  |  | ||  |||||||||| || || ||||||||||||||||| ||||| || ||||| ||   || |         ||  |  | |  |  ||       |   || | |    || | |  ||   |    ||            ||| |     
TAAAGATGTATTTGAAGCTTTCTACAAGAAGGATCTTGCTAAGCGCTTGCTTCTAGGAAAGAGCGCCTCCATTGATGCAGAGAAATCCATGATATCAAAGgtaagaaagtgtaggaagtctatggagttcctcagcattgcagtccagctcgtgatg-gagctcttataccttgcggagcagcgcgattagaatgcctgtc

upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S204_102V6.1 (Physcomitrella patens), 5'ss of exon 8
CAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCAAAAAGACTACTGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGgt-tagggtttttctttctcatttaacttcagaaataattaa--tcgattcttcacataagttttagtaatattaaaagttttctttcattaatacag--
 || ||||| || || || ||||| ||||| ||| | || ||| |  | ||  | || |||||||| |||||||||||||||||||| ||||| || ||||| | |   || |   |     ||   ||| | |  |  | |  |    |||     |    |||  |  ||||   | |||  |||  ||| |   |  
TAAAGATGTATTCGAAGCTTTTTACAAGAAGGATTTGGCCAAACGTTTGCTTCTGGGGAAGAGTGCCTCTATTGATGCAGAGAAATCCATGATATCAAAGgtattgcacttctggatactgcttgtgttccgtagcatgtgaatttcgctctcatggtctcattttattttatttttattttgtttttgttattgttgtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395410|gb|EV265287.1|EV265287
EST:     TGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAG                         TTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTT
genomic: TGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGgttagggttt ... attaatacagTTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTT
EST: gi|151404598|gb|EV274412.1|EV274412
EST:     TGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAG                         TTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTT
genomic: TGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGgttagggttt ... attaatacagTTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTT