Sequence
atgc intronic sequence ATGC exonic sequenceTTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGATACTTCCTgtgggtgctgcttttcttcagaactatcattatgcacacttgaaatacctaaatatctgaaatgctgtattttcttattcgttgggcataagagaatattgtcattattgtgacattttccatgtgctggacttttgcatgctgattcatggttttattttctgaaactgggaaattttttgtttttgtttatag
Basic information
species | Glycine max |
transcript | GLYMA15G09490.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G09490.2 (Glycine max), 5'ss of exon 8
lower sequence: AT4G18950.1 (Arabidopsis thaliana), 5'ss of exon 8
TTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGATACTTCCTgtgggtgctgcttttcttcagaactatcattatgcacacttgaaatacctaaatatctgaaatgctgtattt-----tcttattcgttgggcataagagaatattgtcattattgtgacattttccatgtgctggacttttgcatgctgattcatggttttattttctgaaactgggaaattttttgtttttgtttatag
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CTGCGGGATGATTCAGGGCATCTGAAAGTTGCAGACTTTGGAGTAAGCAAGCTTGTTACTGTTAAAGAAGACAAGCCTTTTACATGTCAAGACATTTCTTgtaagtactttttcgcacccaactagttac--tgtaaattttgaatgctttaattcttgatctgcttggttaaagagtcttcattactggatgtgttataataaaaat-ttatc--ggtgttatccacattatag-----------------------------------------------------------------
upper sequence: GLYMA15G09490.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv10s0003g02060.t01 (Vitis vinifera), 5'ss of exon 8
TTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGG------------CAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGATACTTCCTgtgggtgctgcttttcttcagaactatcattatgcacacttgaaatacctaaatatctgaaatgctgtattttcttattcgttgggcataagagaatattgtcattattgtgacattttccatgtgctggacttttgcatgctgattcatggttttattttctgaaactgggaaattttttgtttttgtttatag
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------------TCGGGACATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGCTGCTGAAAGTTGCTAATACAGTTAAAGAAGATTACCCTCTAATCTGTCAAGAAACTTCTTgtgagta-tgcagtttt---ggattac--ttgtcattgttttcaaaactttaatacatgaattattagcacaccctttctgtaaggagtcat-gcatgttaaagtgg----------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7587824|gb|AW703632.1|AW703632EST: GTTGCTGGCAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGATACTTCCT GCCGCTATGTGGCTCCTGAAGTTTTCAGACAAGAAGAATATGACACTAAAG
genomic: GTTGCTGGCAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGATACTTCCTgtgggtgctg ... ttgtttatagGCCGCTATGTGGCTCCTGAAGTTTTCAGACAAGAAGAATATGACACTAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGATACTTCCTgtgggtgctgcttttcttcagaactatcattatgcacacttgaaatacctaaatatctgaaatgctgtattttcttattcgttgggcataagagaatattgtcattattgtgacattttccatgtgctggacttttgcatgctgattcatggttttattttctgaaactgggaaattttttgtttttgtttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG