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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGATTAGTTTCTCAACTGTCAGGGATAAACTTTTGTCCAGGGTGGATTTTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatattttatttcgtttgtgtaaaatgatctcacaccagaggcttcttgtttaatttctagcttcatacaatacaatataactgatttgtaacatca...

Basic information

species Glycine max
transcript GLYMA15G08090.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G08090.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G28240.1 (Arabidopsis thaliana), 5'ss of exon 8
CCAGATTAGTTTCTCAACTGTCAGGGATAAACTTTTGTCCAGGGTGGATTTTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatattttatttcgtttgtgtaaaatgatctcacaccagaggcttcttgtttaatttctagcttcat-acaatacaatataactgatttgtaacat-ca-
 || || ||||||||||| || || |||||  |     | |      | |      |   ||||||| | ||||||||||||||||| |||||||||||||| | | |||  | || |     | |  |   || | |  ||||  ||  |    |  | ||  ||  || |  |  |  |   |  ||  | | | || || 
TCAAATCAGTTTCTCAACAGTAAGAGATAAGATCGCAGCAAAAACAAACTGGACAGTAAGCATGTTCCTTGATTGTGAAAGACGCAATTTTGTAGTTCAGgtgattttttcgtctcatgc---tgacttagcctaaaagtagag--ttagtaaaaagatcctgactctatcattacccgtttgtatcgaactctcaaatgcag

upper sequence: GLYMA15G08090.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0265g00120.t01 (Vitis vinifera), 5'ss of exon 8
CCAGATTAGTTTCTCAACTGTCAGGGATAAACTTTTGTCCAGGGTGGATTTTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatattttatttcgtttgtgtaaaatgatctcacacca-gaggcttcttgtttaatttctagcttcatacaatacaa-tataactgatttgtaacatca
 || || ||||| || || || || |||||  ||    | | |    |||      |    ||||| ||||| |||||||| || |||||||||||||||||||  |||||||   | || |      || |||   |  | ||   |   |||  ||     || ||| |  |  |     ||  || | | | ||  | |
TCAAATAAGTTTTTCCACCGTAAGAGATAAGATTAGAGCAAAGACAAATTGGACCGTCAATATGTTTTTGGACTGTGAAAGGCGTAACTTTGTAGTTCAGgtaatcattttatcctggttata-gctttgttcttttagaaagaaaatcactgtagaaaaggcaggttctttgaggaggggcattgctaagtag-aatttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7639749|gb|AW734065.1|AW734065
EST:     TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAG                         AAATACCATANGGATATATTGGAGCGCCTGGCTGCTCCAGTGGATGTTGCT
genomic: TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatattt ... ttgcatacagAAATACCATAGGGATATATTGGAGCGCCTGGCTGCTCCAGTGGATGTTGCT
EST: gi|192297456|gb|FG989865.1|FG989865
EST:     TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAG                         AAATACCATAGGGATATATTGGAGCGCCTGGCTGCTCCAGTGGATGTTGCT
genomic: TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatattt ... ttgcatacagAAATACCATAGGGATATATTGGAGCGCCTGGCTGCTCCAGTGGATGTTGCT