Sequence
atgc intronic sequence ATGC exonic sequenceCTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgctctgcaggttatttttaattttggtccaaaagtgtccatattcacattttattcagacgaagataagtttctgttcatgtgaattgtag
Basic information
species | Glycine max |
transcript | GLYMA15G05410.5 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G05410.5 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G102475_T02 (Zea mays), 5'ss of exon 8
CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgc---tctgcaggttatttttaattt-tggtccaaaagtgtccatattcac-attttattcagacgaagataagtttctgttcatgtgaattgtag
| || | |||||||| ||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||| || |||||| |||||| |||| | || | | ||| | | | | || | ||| ||| | |||| | |||| | || | | || || | | | | || || || | | | || | | |||| | | || | |||
CGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaa---ctttgctgctttgcatcaat------cttcacttta-acttagaccc----aaaacttggaatcc-tcattttcttcacttaaagctgtttcacatgtttatgtagtaattctactctctcgtttgatggatctgttattttctgtgttctgcag---------------------------------
upper sequence: GLYMA15G05410.5 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G102475_T03 (Zea mays), 5'ss of exon 8
CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgctctgcaggttatttttaattttggtccaaaagtgtccatattcacattttattcagacgaagataagtttctgttcatgtgaattgtag
| || | |||||||| ||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||| || |||||| |||||| |||| | || | | ||| | | | | || | ||| ||| | |||| | |||| | ||| ||| ||| ||| | | || ||| | | || |
CGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaa---ctttgctgctttgcatcaat------cttcacttta-acttagaccc----aaaacttggaatcctcattttct----tcacttaaagct--gtttcacatgtt-tatgtagta---------------------------------------------------------------------
upper sequence: GLYMA15G05410.5 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM5G810275_T02 (Zea mays), 5'ss of exon 8
CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgctctgcaggttattttta--attttggtccaaaagtgtccatattcacattttattcagacgaagataagtttctgttcatgtgaattgtag
| ||| | |||||||| ||||||||| | |||||||||| ||||||||| ||| |||||||||||||||| |||||||| || |||||| |||||| |||| | || | | | | | ||||| ||| ||| || || ||||| | | | | | || | | | | | | || || || || || ||| | || | | || | || | |||
CGCTTCGCGCTCGTGTAGCTGCTAAGGCGGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCACCATAAAAGGCTGTCCAATTTCTTAAGgtag---ctttgctgctttgcatcattcttcattttgagt-------tagaccc---aaaaattggaacccccattttctttacataagctgtttcccatgtttgtgcagtaattctactatcttgtttgaatgatctgttattttctgtgttctgcag---------------------------------
upper sequence: GLYMA15G05410.5 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM5G810275_T01 (Zea mays), 5'ss of exon 8
CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgctctgcaggttatttttaattttggtccaaaagtgtccatattcacattttattcagacgaagataagtttctgttcatgtgaattgtag
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CGCTTCGCGCTCGTGTAGCTGCTAAGGCGGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCACCATAAAAGGCTGTCCAATTTCTTAAGgtag---ctttgctgctttgcatcattcttcattttgagt-------tagaccc---aaaaattggaacccccattttctttacataagctgtttcccatgtttgtgcagtaa-----------------------------------------------------------------------------
upper sequence: GLYMA15G05410.5 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G102475_T02 (Zea mays), 5'ss of exon 9
CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctag-tcccttcaaga---actggaaatctat-tatatctgatatcaaataatgctctgctctgcaggttatttttaattttggtccaaaagtgtccatattcacattttattcagacgaagataagtttctgttcatgtgaattgtag
| |||| | | | | || | || ||| | | | || | |||| | | || | ||| | | ||||| | |||| | | | | ||| || || | | || | | | | | || ||| | || | || | || |
--------------------------------------------------------------------------------------------------------GTTATTTTTATTTCTGGTCCAAAAGTGTCCATA--TTGACAATTAAATTGAGGGAAGATACATTCTAATTgtatgcagacctgatgtttgataactattagtgtatctgtttacattgtatactaatg-aacaatatttgt-tccatgtttgactcttatctcattacccccttacgtttggcag------
upper sequence: GLYMA15G05410.5 (Glycine max), 5'ss of exon 8
lower sequence: AT1G15200.4 (Arabidopsis thaliana), 5'ss of exon 8
CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgctctgcaggttatttttaattttggtccaaaagtgtccatattcacattttattcagacgaagataagtttctgttcatgtgaattgtag
||||| |||||||||| |||||||| ||||| ||||||||||||| |||| || ||||| |||| |||||| || || | ||| |||||||||||||||| | | |||| | | | | |||||||| || || | | ||| || | || |
CTCTTCGGGCTCGTGTTGCTGCTAAAGCAGAACAAAAGAAATTGGAATTGCTTTTCCTTCAATGGAGTGAGCACCAAAAGAAACTTAGCAATTTTATAAGgta-gtgttgacatgctgttactgcgtg--tgatttagttctatagc--gtacccttacttactctgcatgatgagtctcag------------------------------------------------------------------------------------------------------------
upper sequence: GLYMA15G05410.5 (Glycine max), 5'ss of exon 8
lower sequence: AT1G15200.2 (Arabidopsis thaliana), 5'ss of exon 8
CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgctctgcaggttatttttaattttggtccaaaagtgtccatattcacattttattcagacgaagataagtttctgttcatgtgaattgtag
||||| |||||||||| |||||||| ||||| ||||||||||||| |||| || ||||| |||| |||||| || || | ||| |||||||||||||||| | | |||| | | | | |||||||| || | | ||| | | | | ||||
CTCTTCGGGCTCGTGTTGCTGCTAAAGCAGAACAAAAGAAATTGGAATTGCTTTTCCTTCAATGGAGTGAGCACCAAAAGAAACTTAGCAATTTTATAAGgta-gtgttgacatgctgttactgcgtg--tgatttagttctatagcgtacccttacttactctgcatgatgagtctcagtgatgag-------------------------------------------------------------------------------------------------------
upper sequence: GLYMA15G05410.5 (Glycine max), 5'ss of exon 8
lower sequence: AT1G15200.1 (Arabidopsis thaliana), 5'ss of exon 8
CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgctctgcaggttatttttaattttggtccaaaagtgtccatattcacattttattcagacgaagataagtttctgttcatgtgaattgtag
||||| |||||||||| |||||||| ||||| ||||||||||||| |||| || ||||| |||| |||||| || || | ||| |||||||||||||||| | | |||| | | | | |||||||| || || | | ||| || | || | || | || ||||| ||
CTCTTCGGGCTCGTGTTGCTGCTAAAGCAGAACAAAAGAAATTGGAATTGCTTTTCCTTCAATGGAGTGAGCACCAAAAGAAACTTAGCAATTTTATAAGgta-gtgttgacatgctgttactgcgtg--tgatttagttctatagc--gtacccttacttactctgcatgatgagtctcagtgatgagattgctaactgctatg-------------------------------------------------------------------------------------
upper sequence: GLYMA15G05410.5 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0055g00360.t01 (Vitis vinifera), 5'ss of exon 8
CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatc-tattatatctgata-tcaaataatgctctgctctgcaggttatttttaattttggtccaaaagtgtccatattcacattttattcagacgaagataagtttctgttcatgtgaattgtag
|||| || |||||||| ||||| ||| ||||||||||||| ||||| |||||||||||| ||||| |||||| || ||||| || |||||| | ||||| | | || ||| | || | | | | | | | |||| |||| | | || | | |||| | || || | |||||| | | |||| | | | | ||
CTCTCAGAGCTCGTGTTGCTGCCAAGGCAGAAGAAAAGAAGTTGGAATTGCTGTTTCTTCGGTGGAGTGAGCACCAAAAAAGGCTTTGCAATTATCTAAGg--cacattctttgactat---ttatttccgtgttctggcatttcatttctcccatcaacctttttgtcttgtaccctctttgatggttaagctgtgtttatttctgcaa-tggctcttaacatgtgcttctttgcctgtgtag------------------------------------------------
upper sequence: GLYMA15G05410.5 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0055g00360.t01 (Vitis vinifera), 5'ss of exon 9
CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgctctgcaggttatttttaattttggtccaaaagtgtccatattcaca-ttttattcagacgaagataagtttctgttcatgtgaattgtag-----------------------------------
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----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTATTTTTAATTTTGgtccaaaagtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgcatagtgttgaagcaactgtgaccatttcctgcttctttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254336540|gb|GR842719.1|GR842719EST: CTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAG TGTCGAAGCAACTTGATGACTGGATGTTTCCTGCTAATTGCAGGATTTTAG
genomic: CTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgccctt ... tgaattgtagTGTCGAAGCAACTTGATGACTGGATGTTTCCTGCTAATTGCAGGATTTTAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgctctgcaggttatttttaattttggtccaaaagtgtccatattcacattttattcagacgaagataagtttctgttcatgtgaattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA