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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtagattccttcatttcattctcaacttgctaaagcgcttataataaggaactatttctgtatctttttatacatattaataaagatgtagactgaggacttaaatatatgataatatcag

Basic information

species Glycine max
transcript GLYMA15G04500.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 6
GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtagattccttcattt--cattctcaacttgctaaagcgcttata-ataaggaactatttctgtatctttttatacatattaataaagatgtagactgaggacttaaatatatgataatatcag
|||| ||||||| ||||| || ||||||||||| ||||||||  | |||||||| ||||| || |||||||| ||||| ||||| ||||||||       || ||  ||   |  | ||   ||      |     | |      |||  | || |||  | |  ||  | |||                                       
GATTTTGCTTACCTCAACCTCGGAGGTATATGGAGATCCTCTCATTCATCCCCAGCCTGAGAGCTATTGGGGAAATGTCAACCCAATTGgtaggagtaaacacttatcagcttttaattctcaacttatctgcgtgtcaattcacattcttataacttggtttctattatgatag--------------------------------------

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 7
GATTCTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtagat---tccttcatttcattctcaacttgctaaagcgcttataataaggaactatttctgtatctttttatacatattaataaagatgtagactgaggacttaaatatatgataatatcag
|||  ||||||||||||||||||| |||||||| |||||||||| |||||||||| |||| || |||||||| ||||||||||| || ||||  |   || |||||    |||| |  ||  |       ||| || ||  ||        |         | | | |  ||  || ||   ||   |  |  |  ||               
GATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcatctttcatggttttcttaggtttgttttttatttaaaaaaaaaaaaaggaaaag--------aaaagaaaagaaggaaaata-ggatgaaaaatctctat---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611728|gb|DB962965.1|DB962965
EST:     TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG                         GAGTTCGTAGTTGCTATGATGAG
genomic: TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtagattcct ... ataatatcagGAGTTCGTAGTTGCTATGATGAG
EST: gi|151412093|gb|EV281905.1|EV281905
EST:     TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG                         GAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
genomic: TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtagattcct ... ataatatcagGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
EST: gi|192316740|gb|FK006443.1|FK006443
EST:     TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG                         GAGCTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
genomic: TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtagattcct ... ataatatcagGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
EST: gi|213591579|gb|DB955787.1|DB955787
EST:     CTTGTGCATCCCCAACCCTGAA-GTTATTGGGGCAATGTTAACCCTATTG                         GAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
genomic: CTTGTGCATCCCCAACC-TGAAAGTTATTGGGGCAATGTTAACCCTATTGgtagattcct ... ataatatcagGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
EST: gi|192316741|gb|FK006444.1|FK006444
EST:     TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG                         GAGCTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
genomic: TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtagattcct ... ataatatcagGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
EST: gi|16279667|gb|BI943554.1|BI943554
EST:     TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGGTAACCCTATTG                         GAGGTTCGTA-TTGCTATGATGAGGGGAA
genomic: TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtagattcct ... ataatatcagGAG-TTCGTAGTTGCTATGATGAGGGGAA
EST: gi|192317198|gb|FK007909.1|FK007909
EST:     TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG                         GAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
genomic: TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtagattcct ... ataatatcagGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
EST: gi|19453064|gb|BM954474.1|BM954474
EST:     TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG                         GAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
genomic: TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtagattcct ... ataatatcagGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
EST: gi|192296657|gb|FG991225.1|FG991225
EST:     TCTTGTGCATCCC-AACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG                         GAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
genomic: TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtagattcct ... ataatatcagGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT