Sequence
atgc intronic sequence ATGC exonic sequenceATTGAAACAGACTGTGAAGTTGATTTTGCTCCACCTCTTGATTATAAAGAACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGAAACGACCAAAAGgttgtcattcttttatcatatgttgaaagatgcttttatcaattttctcagttttatttagcaaaaaattcattagcagtttgtgattatattctttgtatttcag
Basic information
species | Glycine max |
transcript | GLYMA15G04140.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G04140.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G29070.2 (Arabidopsis thaliana), 5'ss of exon 7
ATTGAAACAGACTGTGAAGTTGATTTTGCTCCACCTCTTGATTATAAAGAACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGAAACGACCAAAAGgttgtcattcttttatcatatgttgaaagatgcttt-tatcaattttctcagttttatttagcaaaaaattcattagcagtttgtgattatattctttgtatttcag
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ATCGAAACGGATTGTGAGGTTGATTTTGCTCCTCCTCTTGATTACAAAGAACCTGAGAAGCCACAGAAGTTGACTCCTTCAAACAAACGACCTCTCCAAGgtt--tgctcatttggaaactctctattgatattcgataccgttctttctagaagtatt-agcctcaagttgtacctctattttcctttttgttcattgtag-----
upper sequence: GLYMA15G04140.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g05010.t01 (Vitis vinifera), 5'ss of exon 4
ATTGAAACAGACTGTGAAGTTGATTTTGCTCCACCTCTTGATTATAAAGAACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGAAACGACCAAAAGgttgtcattcttttatcatatgttgaaagatgcttttatcaatttt----ctcagttttatttagcaa---aaaattcattagcagtttgtgattatattctttgtatttcag---------
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------ACAGACTGTGAGGTGGACTTTGCTCCTCCTCTTGATTATGAAGAAGCCGACGAACCAAAACCATCTAACCTCTCTAGCAAGACAGAATCTAGAGA--GTCAAg--tgagacacagtcagaaggtttttctcctctttttttttccttggtttctttgagggatttgaagatttctactgacatgattgcaaatctacaatgtttcaattgatacag
upper sequence: GLYMA15G04140.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S245_32V6.2 (Physcomitrella patens), 5'ss of exon 7
ATTGAAACAGACTGTGAAGTTGATTTTGCTCCACCTCTTGATTATAAAGAACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGA---AACGACCAAAAGgt-tgt-cattcttt-tatcatatgt---tgaaagatgcttttatcaattttctcagttttatttagcaaaaaattcattagcagtttgtgattatattctttgtatttcag---------------------------
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---GAAACAGATTGTGAAGTTGACTTCGCTCCTCCACTTGATTATAAAGAGCCAGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacacaatttgtacaagacgtaattgaattaccgacttgaatttcttttggaatccgtagtgcctaaagtcttcttgcgctttctatacctccctgaagtaattttctattgttcccccttttttgttaaatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10848371|gb|BF071732.1|BF071732EST: ACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGAAACGACCAAAAG TTGAAGATGAGCCGCCAACAAAGATTGCCCGGTTGACTCCATTCACTGGTT
genomic: ACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGAAACGACCAAAAGgttgtcattc ... tgtatttcagTTGAAGATGAGCCGCCAACAAAGATTGCCCGGTTGACTCCATTCACTGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGAAACAGACTGTGAAGTTGATTTTGCTCCACCTCTTGATTATAAAGAACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGAAACGACCAAAAGgttgtcattcttttatcatatgttgaaagatgcttttatcaattttctcagttttatttagcaaaaaattcattagcagtttgtgattatattctttgtatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA