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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAATGGAGGAGATAACTGCATTCATCAATGGTGCTCTTTCTGACAATCAATGTCTGGGACGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGgtatcctcggttgatcttctatattgtttctttagtctactatatccaatgaggctttaacttctatcatagaacaaatcttgcttcttagtccttttattcatgtctaactgcag

Basic information

species Glycine max
transcript GLYMA15G03900.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03900.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 5'ss of exon 6
AGAAATGGAGGAGATAACTGCATTCATCAATGGTGCTCTTTCTGACAATCAATGTCTGGGACGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGgtatcctcggttgatcttctatattgtttctttagtctactatatccaatgaggctttaacttctatcatagaacaaatcttgcttcttagtccttttattcatgtctaactgcag
|||||||||||||||| |||||||  | || | |||  |||   |  |||||||||| ||||| ||||| || ||||||||||| || || |||||||||||| |     |     | || || |||  | |  |     |  ||       | | ||  ||        ||   ||    |  ||  |   |||  | ||    || | ||| ||
AGAAATGGAGGAGATATCTGCATTTGTGAAGGATGCAATTTGCAATGATCAATGTCTAGGACGCTGCCTTTATATTCATGGTGTACCAGGCACTGGCAAGgtaac-----taaccatcctttactgtcccctatgatggtttgat-------gtccttttctgtggctgaaggctaagcaatattttctgtgcctactttt----tcaacctgtag

upper sequence: GLYMA15G03900.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g00530.t01 (Vitis vinifera), 5'ss of exon 6
AGAAATGGAGGAGATAACTGCATTCATCAATGGTGCTCTTTCTGACAATCAATGTCTGGGACGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGgta---tcctcggttg---atc-ttctatattgtttctttagtctactatatccaatgaggcttt----aacttctatcata---gaacaaatcttgcttcttagtcct-tttattcatgtctaactgcag
 |||||||| |||||||||||||| || || |||||  | |   |  |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||      | || ||   ||  ||  ||| |||| | ||| |  |  | |  | ||  |  |||     |  | | |  |     ||  | | || ||| || || || ||||| |    | ||||||||
GGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTCTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAGgtagatctgttggctgtaaataattaaataatgttgcgttatttcaa-acaggcgataggttttttcttgatctttttgctgcttaaatgagtattacttttttgtactctttatccgctccaaactgcag

upper sequence: GLYMA15G03900.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g02050.t01 (Vitis vinifera), 5'ss of exon 7
AGAAATGGAGGAGATAACTGCATTCATCAATGGTGCTCTTTCTGACAATCAATGTCTGGGACGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGgta---tcctcggttg---atc-ttctatattgtttctttagtctactatatccaatgaggcttt-----aacttctatca--tagaacaaatcttgcttcttagtcctttt-attcatgtctaactgcag
 |||||||| |||||||||||||| || || |||||  | |   |  |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||      | || ||   ||  ||  ||| ||||   ||| |  |  | |  ||||  |  |||     | ||| |  |   |  ||  | | || ||| || || || || || |    | ||||||||
GGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTTTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAGgtagatctattggctgtaaataattaaataatgttgtgttatttcaa-acaggcaataggttttttcttgatcttttcgctgcttaaatgagtattacttatttgtactcttcatccgctccaaactgcag