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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACCACTTGAAAATTTAGAACCTGTTTTGAGAGAAGATATTCAGAAGgtaatgcagtgatctcacttttatatgatgttatcaaataggtatccaatttttttgttaacctttatttctctactttttacttggcag

Basic information

species Glycine max
transcript GLYMA15G02780.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02780.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G72960.1 (Arabidopsis thaliana), 5'ss of exon 8
ACACCACTTGAAAATTTAGAACCTGTTTTGAGAGAAGATATTCAGAAGgtaatgcagtgatc--tcacttttatatgatgttatcaaataggtatccaatttttttgttaacctttatttctctactttttact-tggcag
|||||  | ||||||||||| ||||| || ||||||||||||||||||||||   ||   |   | ||||| |  | ||     ||| | | ||  |        || | ||| || ||  | |  | || | | ||||||
ACACCGTTGGAAAATTTAGAGCCTGTCTTAAGAGAAGATATTCAGAAGgtaaaagaggagtgagtgactttcagctaatt---ccaagttgataagc--------tgatcaccgtt-ttgttttgttcttcattgtggcag

upper sequence: GLYMA15G02780.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 8
ACACCACTTGAAAATTTAGAACCTGTTTTGAGAGAAGATATTCAGAAGgtaatgcagtgatctcacttttatatgatgttatcaaataggtatccaatttttttgttaacctttatttctctactttttacttggcag
|||||||| |||||||||||||||||| | || |||||||| |||||||||| | | |  |       || | | || |||| ||  | |  |    ||  |||  |||  | | ||  | |||| | | |       
ACACCACTGGAAAATTTAGAACCTGTTCTAAGGGAAGATATCCAGAAGgtaaagaatttgttgtttccttgt-ttattttattaaccatgagtt--gttgattttgtaa--tgtgttcttttactgtatgcag-----