Sequence
atgc intronic sequence ATGC exonic sequenceACCCTACACATTGTAATACGTTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCTAAACTgtaagtacattcttttgttataatcttgttggttcctgacaagtatcccattcctcccataaggctttcagattttaacaaatgtttaaacagttgacag...
Basic information
species | Glycine max |
transcript | GLYMA15G02640.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g36770.2 (Oryza sativa), 5'ss of exon 8
ACCCTACACATTGTAATACGTTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCTAAACTgtaagtacattcttttgt------------tataatcttgttggt---tcctgacaagtatcccattcctcccataa------ggctttcagattttaacaaatgtttaaacagttgacag-------------------------------------------------
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ACCCAACTCATTGTAATACACTGGCCTATAGCAGTTCAAAGGGTTCTATCCGACTCATTGATCTGCGACAATCAGCTTTGTGTGACAACCATTCCAAGATgttagtaattcatcttatgccttttacctgcaacattttatccgtgtgtactggaggtagtcgtggacttcttttgacggttgggacttggggctgcataagattctctattctatactagtaatagaatgtcacaatatcagcatgagataacaagaacctttaaacag
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 8
ACCCTACACATTGTAATACGTTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCTAAACTgtaagtacattcttttgttataatcttgttggttcctgacaagtatcc----cattcctcccataaggcttt---------cagattttaacaaatgtttaaacagttgacag--------------------------------
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ATCCTACCCACTGCAATACGTTGGCATATAGTAGCTCTAAGGGATCCATTCGACTTGTTGATCTGCGCCAATCAGCCCTTTGCGACACTCATTATCAAATgtgag------cttttagtttacactttttatttcctacaatatgttcagtatactctacttggagaatattgggtggatactgaccttatcaattatcctaaaagtttccttgtatttttatacctgttcatgtcttcttgtag
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 9
ACCCTACACATTGTAATACGTTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCTAAACTgtaagtacattcttttgttataatcttgttggttcctgacaagtatcccattcctcccataaggctttcagattttaacaaatgtttaaacagttgacag-----------
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ATCCATCCCATTGTAATACACTGGCCTATAGTAGTTCAAAGGGTTCTATCCGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAATgttagtaacccccc-----ataactct------ccctaacattttatccttttgtctggcaaagttgagaacttgtatgaaggattgggaatatgtgcagttatttatgga
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G51690.2 (Arabidopsis thaliana), 5'ss of exon 8
ACCCTACACATTGTAATACGTTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCTAAACTgtaagtacattcttttgttataatcttgttggttcctgacaagtatcccattcctcccataaggctttcagattttaacaaatgtttaaacagttgacag
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ATCCTACCCATTGCAATATGTTAGCCTATAGCAGTTCGAAAGGTTCAATTCGCCTGATTGATCTGCGCCAGTCAGCTTTATGTGATTCACATTCAAAATTgtaagtcttgagactggcaattatgttaagtttttttagagtccagtatatcttgaaaggaggatctaaaaacttgtataatcatctcaattacttcttt
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 8
ACCCTACACATTGTAATACGTTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCTAAACTgtaagtacattcttttgttataatc-ttgttggttcctgacaagtatcccattcctcccataaggctttcagattttaa--caaatgtttaaacagttgacag
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ACCCTACCCATTGTAACATGTTAGCATATAGTAGTTCAAAAGGCTCAATCCGCCTTAATGATTTGCGACAGTCAGCACTGTGTGATTCTCATTCTAAATTgtgagtg-gcttgcttgttttagtcatttttattttttttcatttgtcttaaaa-taatataataggtgaaggagagaaatcaaatggcaatagaataactc-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11274020|gb|BF324388.1|BF324388EST: CGTCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCTAAACT ATTTGAGGAACAGGAAGCCCCAGGGTCCAGATCATTTTTCACAGAGATTAT
genomic: CGTCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCTAAACTgtaagtacat ... tttgatgcagATTTGAGGAACAGGAAGCCCCAGGGTCCAGATCATTTTTCACAGAGATTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCCTACACATTGTAATACGTTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCTAAACTgtaagtacattcttttgttataatcttgttggttcctgacaagtatcccattcctcccataaggctttcagattttaacaaatgtttaaacagttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc