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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAATAGATCAACTTGTCTATTGTATAAATAGTTATAGAGAAGCTGCAATGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAGgtaattggttgctgccgtttctgtaagtcttttaattcatggttgccatttagctgaaattgttttccattttgtttgcag

Basic information

species Glycine max
transcript GLYMA15G01750.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01750.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 7
AGTAATAGATCAACTTGTCTATTGTATAAATAGTTATAGAGAAGCTGCAATGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAGgtaattggttgctgccgtttctgtaagtcttttaat--tcatggttgccatttagctgaaattgttttccattttgtttgcag--------------------------------------------------------------------------
|||  | ||||||||||| |||||||| |||||||| ||||| || |||||||| ||||||||||| || || ||||| ||  ||   || ||||| |||||||| | || |||   | | ||||| |   ||| |  |||   |   |   ||||     |      ||| | |   ||||                                                                           
AGTGGTTGATCAACTTGTTTATTGTATCAATAGTTACAGAGAGGCAGCAATGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagatt-ctgtattgtttgtaaattgattattcttcaaaatgctcccctagcct--ctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193517982|gb|FK474041.1|FK474041
EST:     TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACNG
genomic: TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgtttgcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|33388505|gb|CA851712.1|CA851712
EST:     TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgtttgcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|33390219|gb|CA853426.1|CA853426
EST:     TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGG
genomic: TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgtttgcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGG
EST: gi|193488401|gb|FK457540.1|FK457540
EST:     TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTG
genomic: TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgtttgcagGTCTTAAATGAATGTGTG