Sequence
atgc intronic sequence ATGC exonic sequenceCACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaatgtgaagtgcacagattactgagttatgaggtttaacattacgcttattctatttggcatatgcctctaccttttcttctcccatcatcatcactc...
Basic information
species | Glycine max |
transcript | GLYMA15G01680.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 8
CACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaatgtgaagtgcacagattactgagttatgaggtttaacattacgcttattctatttggcatatgcctctacct---tttcttctcccatcatcatcactc
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CACACAACATTTCTGCTGTTTGTTTCCATCCTGAGCTTCCTATAATCATTACTGGATCTGAAGATGGCACAGTTCGCATATGGCATTCGACAACTTACAGgttgctttcacagtttcacttgt--gtttttgcttgttgatgtggactgtttcctagttctcattgtttgctattcaagtgctctctacgaaagaaacaact-
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G000645_T02 (Zea mays), 5'ss of exon 8
CACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaatgtgaagtgcacagattactgagttatgaggttta----acattacgcttattctatttggcatatgcctctaccttttcttctcccatcatcatcactc
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CACATAATATTTCTGCTGTTTGTTTCCATCCTGAGCTCCCTATAATCATTACTGGATCTGAAGATGGTACAGTTCGTATATGGCATTCGACAACTTACAGgtaacatgtttt-tatttatctctatgtttgcttgtttatgtaagcagaggtccgttcaatttttctttacaatttggccattatcaattctccatcctga---
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 9
CACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgta---atgtgaagtgca---cagattactgagttatgaggtttaa-cattacgcttat-tctatttggcatatgcctctaccttttcttctcccatcatcatcactc
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CACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGACAGGTTCAGAGGATGGAACTGTTCGCCTATGGCACTCCACTACTTACAGgttcttatgctatttctgttctagtttgtggctttgtgacgttttgtctttgtgtttacatcttgatgacgtggtgctcttgtatatgtatttctatcag--------
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 7
CACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaatgtgaagtgcaca-gattactgagttatgaggtttaacat-tacgcttattctatttggcatatgcctctaccttttcttctcccatcatcatcactc
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CACATAACATTTCTGCTGTTTGTTTCCATCCTGAGCTCCCTATAATCATTACTGGATCCGAAGATGGTACAGTTCGTATATGGCATTCAACAACTTACAGgtaacatgctttttttttgtttatctctatgtttgcttgtttatgtaagtagaagtctgtcagttttcatcgttacaatttggccatttatcaat-tctct-
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G419984_T01 (Zea mays), 5'ss of exon 7
CACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaatgtgaagtgcacagattactgagttatgaggttta----acattacgcttattctatttggcatatgcctctaccttttcttctcccatcatcatcactc
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-----------------------------------CTCCCTATAATCATTACTGGATCTGAAGATGGTACAGTTCGTATATGGCATTCGACAACTTACAGgtaacatgtttt-tatttatctctatgtttgcttgtttatgtaagcagaggtctattcaatttttctttacaatttggccattatcaattctccatcctga---
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G141587_T01 (Zea mays), 5'ss of exon 8
CACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaatgtgaagtgcacagattactgagt-tatgaggtttaacattacgcttattctatttggcatatgcctctaccttttcttctcccatc--atcatcactc
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CACATAATGTTTCTGCTGTATGTTTCCACCCAGAGCTACCTATAATAATTACTGGTTCAGAGGATGGGACAGTTCGAATGTGGCATTCTACTACCTACAGgtattgctacacatctattttagtacccctggcatgcatgtcgct-tgcttatatatgtatgcaagtgtgctttcattttaaggccaaatctggtagccac--
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G124886_T04 (Zea mays), 5'ss of exon 8
CACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaatgtgaagtgcacagattactgagttatgaggtttaacattacgcttattctatttggcatatgcctctaccttt-tcttctcccatcatcatcactc---
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CACATAATGTGTCCGCTGTATGTTTCCATCCAGAGCTACCTATAATTATTACTGGTTCAGAGGATGGGACAGTTCGAATGTGGCATTCTACTACCTACAGgtattgcta--ttcatctatttaggccccatttggttgggc--tgctttgggctcaggctccacactacaataccagagtagccacaaatcgtggcttatctgg
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 12
CACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaat--gtgaagtgcacagattactga-gttatgaggtttaacattacg---cttattctatttggcatatgcctctacct-----tttcttctcccatcatcatcactc--
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CACACAATGTTTCTGCAGTATCTTTTCATCCAGAGCTACCTATAATTATTACAGGATCCGAGGATGGAACTGTTCGCATATGGCACGCCACCACTTACAGgtaactcgtatgctgtctgcattggagctgctattgattttgtctttaaaaacttccttcaatttttcaaaaatcttcatccaacagttttttacttaatacttgacatctag
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 8
CACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaatgtga-agtgcacagattactgagttatgaggtttaacatta--cgcttattctat---ttggcata--tgcctctaccttttcttctcccatcatcatcactc------------------------------------------------------------------------
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CACACAATGTATCTGCAGTATGTTTCCATCCAGAGCTTCCAATTATAATCACAGGTTCTGAAGATGGCACCGTTCGCATTTGGCATGCAACCACATACAGgtattataatattaaacagtttttttttgttggacatattatagtaaacgcttcttgtatgccttggctaaaccatctccactttggcttcattcttgtgcactttttcaccattaccaatttcttttattgtccttccatttgtaatcccaatttcctaatgtctgttttttcttgcag
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 8
CACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaatgtgaagtgcacagattactgagttatgaggtttaacattacgcttattctatttggcat----atgcctc--taccttttcttctcccatcatcatcactc------------------------------------------------------------------------------
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CACACAATGTTTCTGCCGTATGTTTCCATCCAGAGCTTCCAATAATAATCACAGGTTCTGAGGATGGCACTGTTCGCATTTGGCACGCCACTACCTACAGgtatttttaccta-acgttttcctg--tcaaaagacataacaatgcttacattttttggggttttttaacacttgaatacactttgttcacatgcggttatttcttgtattcattttcaccataggttcgctttctctattttgtcgtttgatttgttatcttcgattctctttctcttttcag
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 8
CACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaa----tgtgaagtgcacagattactgagttatgaggttta-acattacgcttattctatttggcatatgcctctaccttttcttctcccatcatcatcactc
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CACACAATGTTTCTGCAGTCTGCTTCCATCCTGAACTTCCCATAATAATAACAGGTTCTGAGGATGGGACTGTTCGAATATGGCATGCTACCACTTATAGgtaagctccatatcatatgcaattttctaa--tatgaagttcacatgttaaactaaccttgacatcctgctgtttcttttttatttatttttgggctttcaa---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208112800|gb|GD908759.1|GD908759EST: ACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAG GCTTGAGAACACATTAAACTATGGTCTTGAAAG
genomic: ACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaatgtgaa ... gtatttgcagGCTTGAGAACACATTAAACTATGGTCTTGAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGgtaatgtgaagtgcacagattactgagttatgaggtttaacattacgcttattctatttggcatatgcctctaccttttcttctcccatcatcatcactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctccc