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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGTAAAGACTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaattaaataaatatgtagtcaaaatgtacaacttttattcaaacccgaatgcatcaatatatataatgtaactatatttagagagaatgagaaaaggggtgtctcagtcacagtcacggtcacatctgaaaggtttgctgtaaaacgtag

Basic information

species Glycine max
transcript GLYMA15G00560.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00560.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 8
GTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGTAAAGACTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaattaaataaatatgtagtcaaaatgtacaacttttattcaaa-----cccgaatgcatcaatatat-ataatgtaactatatttagagagaatgagaaaaggggtgtctcagtcacagtcacggtcacatctgaaaggtttgctgtaaaacgtag
 |||||||| || || ||||| |||||||||||||||||||| |||||||  || || ||||||||||| |  |||||||| ||||| |||||||||||||||||   | | | |   || ||  |  || | |      ||||    |      ||| |||  |  ||| | | || |  |   | | |  |     |                                                                
TTATGTGGAAACTGCAGATCGCCCTGGATTACTGGTGGATCTCGTAAAGAGCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaat---agtcactttgtacgtgctgcaattttcaggtctttaaaggaggatagcccaaatttactaatttgtcatcaaatttttgtttccacttctag---------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561080|gb|CD486918.1|CD486918
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|31458838|gb|CD400866.1|CD400866
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|19270328|gb|BM886584.1|BM886584
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|14011576|gb|BG726498.1|BG726498
EST:     CTATTACGGACATTAACATTATCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|31469241|gb|CD411269.1|CD411269
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|12690601|gb|BG156937.1|BG156937
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|120528775|gb|EH256909.1|EH256909
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|31465213|gb|CD407241.1|CD407241
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|22525960|gb|BU084771.1|BU084771
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|31561420|gb|CD487258.1|CD487258
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|6134263|gb|AW132656.1|AW132656
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|120491081|gb|EH219248.1|EH219248
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|6227733|gb|AW156332.1|AW156332
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAAGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|7685965|gb|AW756613.1|AW756613
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|120494269|gb|EH222436.1|EH222436
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|214006697|gb|DB987579.1|DB987579
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|31476080|gb|CD418108.1|CD418108
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|8670314|gb|BE191421.1|BE191421
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|18038897|gb|BM307191.1|BM307191
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|31305353|gb|CD390556.1|CD390556
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|22525511|gb|BU084322.1|BU084322
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|8670334|gb|BE191441.1|BE191441
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|8825880|gb|BE209610.1|BE209610
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|9902370|gb|BE611338.1|BE611338
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|31308476|gb|CD393679.1|CD393679
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACCCTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|31305762|gb|CD390965.1|CD390965
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|9901764|gb|BE610732.1|BE610732
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTCGGCTAATGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|10238330|gb|BE807146.1|BE807146
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|31458576|gb|CD400604.1|CD400604
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|13125321|gb|BG315891.1|BG315891
EST:     CTATTACGGACATTAACATTGCCGNTGAATCCGGAGAATTTGACACTGAG                         GGGCTTTTGGCTAAAGCAAAGTTTCAT
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCAT
EST: gi|120497144|gb|EH225311.1|EH225311
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|22522210|gb|BU081021.1|BU081021
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|120491074|gb|EH219241.1|EH219241
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: gi|120531768|gb|EH259901.1|EH259901
EST:     CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG                         GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATGTGGAGACAGCTGATCGGCCTGGATTACTGGTGGATCTTGTAAAGACTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaattaaataaatatgtagtcaaaatgtacaacttttattcaaacccgaatgcatcaatatatataatgtaactatatttagagagaatgagaaaaggggtgtctcagtcacagtcacggtcacatctgaaaggtttgctgtaaaacgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA