1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCTGAATTTATTAACTTCCCTATCTATATTTGGGCAAGCAAAGAAGTTGATGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatatttttaagagttcagttggatctctccatttatatcctgtttcaagatgctgttttggtgtttgttcattcttgtatattatggttatggtaatttaaactgtcattcttaccttttttttattccttgaacag
species | Glycine max |
transcript | GLYMA14G40320.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTGEST: gi|193649075|gb|FK600202.1|FK600202
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
EST: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTGEST: gi|298173461|gb|HO016797.1|HO016797
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
EST: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTGEST: gi|58019806|gb|CX706548.1|CX706548
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
EST: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTGEST: gi|163922973|gb|EH039569.1|EH039569
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
EST: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCEST: gi|298194890|gb|HO043362.1|HO043362
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGC
EST: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGAEST: gi|193710049|gb|FK643349.1|FK643349
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGA
EST: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTGEST: gi|208219473|gb|GE020571.1|GE020571
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
EST: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGEST: gi|193341243|gb|FK305545.1|FK305545
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAG
EST: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTGEST: gi|254328195|gb|GR835160.1|GR835160
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
EST: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGAATTTATTAACTTCCCTATCTATATTTGGGCAAGCAAAGAAGTTGATGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatatttttaagagttcagttggatctctccatttatatcctgtttcaagatgctgttttggtgtttgttcattcttgtatattatggttatggtaatttaaactgtcattcttaccttttttttattccttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT