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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaatttatatctgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatggtattgaatcttttatgcttgaatttgtatag

Basic information

species Glycine max
transcript GLYMA14G36280.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 8
TTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaatttatatctgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatggtattgaatcttttatgcttgaatttgtatag
 ||||||||||||| |  |||||||||||||| || || ||||| ||||| ||||| ||||| || |||||||| ||||  ||  | || ||||| | || ||     | |  ||   |   |  | ||| || |      ||| || || |    | | | ||  || |  |  ||| || |   
ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaattttac----tgctcaatagtgcatgctgaatcttcacc----ttctgtaatcagtcaaataattcacttgttatgcaatctgcag--

upper sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 8
TTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaa--tttatatctgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatggtattg-aatcttttatgcttgaatttgtatag-----------------------------------------------------
||||||||||| || |  |||||||||||||| || ||  |||||||||| ||||| |||||||| || ||||||||||  ||| | || |||| ||  ||| | ||    | || |  ||   | |  ||  |  |    |  |    ||| ||  ||||  |      ||| |   |  ||| |  |                                                     
TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAAGTGCATATGCTCGGCTATATGATTATGACCGTATGCGGAAGgcaaggtttctttccacgatagtattttt--tctccaagatgcaagggagctgca-cattattatattacagagaactatacagaacattgaaccgcgatctttttttttttatcaatcaaataattccataatgttatgtgtcgacag

upper sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 8
TTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaatttatatctgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatggtattgaatcttttatgcttgaatttgtatag
 | || || ||||| |  ||||| || || ||| | || ||||| ||||| |||||||||||||| || ||||| ||||||||| |||| |||||||  |||      |     ||||   |  | | | ||||||     | ||    |    || || ||  || |       || ||| |   
CTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGgtaaagtat------tgtctcaactcttgagtgtgaagtttagt----tacaaaagttgcagttttcaaggttatgcataaaaaattgcag--

upper sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 8
TTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaatttatatctgatacagaaac----ttaggtatttaatgtttagaacaattcagtc----atgatggtattgaatcttttatgctt-gaatttgtatag------------------------
|||||||||||||| || || || || |||||| |||| |||||||| || ||||| ||||| || |||||||||||||||||| | ||||||||||   || |  | |  ||  ||     |  ||   | ||  | | |||| |  |||     || ||  | || ||   |  ||| || ||| | || ||                         
TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGgtaagagattttggtttgagggacactactgcgttcatcatagtcacaacattaaagttctctattattattttaaagtctaaatgtttagaaatcgtgtaactttaaattcttaggatttaacag

upper sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S79_54V6.1 (Physcomitrella patens), 5'ss of exon 8
TTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgta-atttatatctgataca-gaaacttaggtatttaatgt--ttagaacaattcagt-------catgatggtattgaatcttttatgcttgaatttgtatag-----------------------------------------------
 |||||||||| ||||  ||||  ||||||||||| ||||| |||||||| ||||| |||||||||| ||| || ||||| ||| | ||||||||   |||| || ||||    |   | |  | |||   ||   ||  | || ||   |       ||   |  | || | | |   || ||  | | ||||                                                  
ATGGAGAAAAGCGCAGTTCTTTACAGGCCAAAATTGATAGTAGCTGGTGCCAGTGCCTATGCTCGCCATTACGACTATGCTCGTATGCGCAAGgtgtgtttaaatttgatgtttgcggcctttgcattatgtgaaattgcatcatttgtatgtttctacagtgtaatgttaactatccgatactctactgtgtacctgctccttcgagttcatatgtgatctgcaaattgtctttctcatgcag

upper sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 5'ss of exon 8
TTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaatttat--atctgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatggtattgaatctttt--atgcttgaatttgtatag--------------------------------------
 ||||||| || ||| |||| || || ||||| || ||||| |||||||||||||||||||| |||| ||| || || || ||  | ||| ||||   ||     ||   |  | |   ||   |  ||    |||   |||      | ||     | | | || |     ||   |||| ||||  |                                       
ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgctagtccttttaacaggtttctatgattgg-atttgttacacccatattattgcaatttagtatttgaaggatctgtgaacttgttaatcccccgtttgaaaactcacgactggctgttttttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269481|gb|BM885737.1|BM885737
EST:     GGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAG                         GTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT
genomic: GGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaatttata ... atttgtatagGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT
EST: gi|192312199|gb|FK003920.1|FK003920
EST:     CTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAG                         GTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT
genomic: CTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaatttata ... atttgtatagGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT
EST: gi|19348549|gb|BM893081.1|BM893081
EST:     CTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAG                         GTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT
genomic: CTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaatttata ... atttgtatagGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT
EST: gi|192312198|gb|FK003919.1|FK003919
EST:     CTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAG                         GTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT
genomic: CTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaatttata ... atttgtatagGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT
EST: gi|209724640|gb|BW651425.1|BW651425
EST:     CTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAG                         GTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT
genomic: CTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaatttata ... atttgtatagGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT