1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttgattactgtttgcaacctgaaagtttatagctagatatgattcactctaataattattttcactgtatggataattagtaactttctactt...
species | Glycine max |
transcript | GLYMA14G31890.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGAEST: gi|254347036|gb|GR856706.1|GR856706
genomic: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGA
EST: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGAEST: gi|14011351|gb|BG726273.1|BG726273
genomic: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGA
EST: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGAEST: gi|19348049|gb|BM892581.1|BM892581
genomic: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGA
EST: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGAEST: gi|7588767|gb|AW704555.1|AW704555
genomic: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGA
EST: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGAEST: gi|15337173|gb|BI497829.1|BI497829
genomic: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGA
EST: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGAEST: gi|16344154|gb|BI969749.1|BI969749
genomic: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGA
EST: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGAEST: gi|208218594|gb|GE020546.1|GE020546
genomic: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGA
EST: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAA-TTGAACTGATTATTCTTGCAAGTGATGGAEST: gi|208076237|gb|GD879044.1|GD879044
genomic: TTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGA
EST: CAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGA
genomic: CAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCGTATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttgattactgtttgcaacctgaaagtttatagctagatatgattcactctaataattattttcactgtatggataattagtaactttctactt
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC