Sequence
atgc intronic sequence ATGC exonic sequenceAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGGAGCTAAAGAAGgtcctctttctctctctctctctatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtctttctacatgca...
Basic information
species | Glycine max |
transcript | GLYMA14G14400.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G14400.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0008g05480.t01 (Vitis vinifera), 5'ss of exon 8
AGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGGAGCTAAAGAAGgtcctctttctctctctctctctatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtg-tgtgtgtgtgtgcgtgtgtgtgtgtctttctacatgca
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AGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAGCAACGCCCATGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAGgtatattttatttcttatgttgtttgatttcaggca-aaatgaatgttatcatttgttcatgacattaaagaatttacttcatagcaagtatctaaattgg
upper sequence: GLYMA14G14400.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0016g05460.t01 (Vitis vinifera), 5'ss of exon 8
---AGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGGAGCTAAAGAAGgtcctctttctctctctctctctatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtctttctacatgca
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AGAAGCAGAGATTAAGATGCTACGGAAGAGCTTAAATTTTAAAGCAACCCCTATGCCAAGCTTCTACCATGAACCTACACC---CAAGGTGGAGTTGAAGAAGgtaacttctattctagttgtcatggattgatattaagtactgtttgtttttagtttctctcatgggcataaacgtctccagttatatcatatgtttaggaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58017626|gb|CX704368.1|CX704368EST: GGAGCTAAAGAAG ATACCAACTACAAGAGCAAAATCACCCAAGCTTGGTCGTAAGAAGAGTACA
genomic: GGAGCTAAAGAAGgtcctctttc ... actaatgtagATACCAACTACAAGAGCAAAATCACCCAAGCTTGGTCGTAAGAAGAGTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGGAGCTAAAGAAGgtcctctttctctctctctctctatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtctttctacatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc