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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTTTACCCTGTACAATATTGATACCTGGCCTATTTTTCATTCCCGAGTCCCCTAGATGGCTGgtaagctttgtgaatcagtattcttgagtgtgatcgaatatgtgttgttagtttctaaaagtgaatttgttttgctgaatatag

Basic information

species Glycine max
transcript GLYMA14G08070.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 5'ss of exon 7
GAATTTTACCCTGTACAATATTGATACCTGGCCTATTTTTCATTCCCGAGTCCCCTAGATGGCTGgtaagcttt---gtgaat-cagtattcttgagtgtgatcgaat-atgtgttgttagtttctaaaagtgaatttgttttgctgaatatag----
|||| || || || ||  | ||||||||||||||||| |||||||| || ||||| |||||| ||||| |  ||   ||  || ||  |        ||  ||   || || ||       ||| || |     |||| | |  ||  ||||      
GAATCTTGCCTTGCACTGTGTTGATACCTGGCCTATTCTTCATTCCAGAATCCCCAAGATGGTTGgtatgtattattgtatatgcaaaaaatcgatatgaaattacatcatctgaatcatttttttatagccatatttttatctctatatatctctag

upper sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 5'ss of exon 7
GAATTTTACCCTGTACAATATTGATACCTGGCCTATTTTTCATTCCCGAGTCCCCTAGATGGCTGgtaagctttgtgaatcagtattcttgagtgtgatcgaatatgtgttgttagtttctaaaagtgaatttgttttgctgaatatag
|||   | || |||||| | || |||||||| ||||| |||||||| || ||||| |||||||||||| |  || |  | |    ||    | ||| |||  | || ||   |  ||  |   |||    ||  |    ||  ||  ||
GAAGCATCCCATGTACATTGTTAATACCTGGTCTATTCTTCATTCCGGAATCCCCAAGATGGCTGgtatg--ttatacacctaagttggatattgt-atcacaaatctgaaatctgtagc---aagcactttcctacatctatatgcag

upper sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G077546_T02 (Zea mays), 5'ss of exon 7
GAATTTTACCCTGTACAATATTGATACCTGGCCTATTTTTCATTCCCGAGTCCCCTAGATGGCTGgtaagctttgtgaatca----gtattcttgagtgtgatcgaatatgtgttgtt--agtttctaaaagtgaatttgttttgctgaatatag--
|||  || |||||   | | ||||||||||||||||| |||||||| || || || ||||||||||||         |  ||    | ||  |  | | | |   | ||||     ||  | |||| ||       ||        |  || |    
GAACGTTGCCCTGCTTATTTTTGATACCTGGCCTATTCTTCATTCCGGAATCTCCAAGATGGCTGgtatatacacacacacaagatggataatgaactctaaataattatgcaaaattgcaatttccaatgcccgtttctccaccttatatttgtag

upper sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G75220.1 (Arabidopsis thaliana), 5'ss of exon 8
GAATTTTACCCTGTACAATATTGATACCTGGCCTATTTTTCATTCCCGAGTCCCCTAGATGGCTGgtaagctttgtg--aatcagtattcttgagtgtgatcgaatatgtgttgttagtttctaaaagtgaatttgttttgctgaatatag--------------------------------------------
| || || || |||||| |||||||||| || || |||||||| ||||| |||||| | |||||||||||| ||     | |  |  |  |    |    |  | |   | || || ||| ||  |      ||| ||||  | |  | |                                             
GGATATTGCCGTGTACATTATTGATACCAGGTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTGgtaagccttacagtagtttgcttattcttcttgagtttagtgcatatt-ttggttactccactcttttttttttttttaataacatcattaatcatctctgatgggatacttgatttcgttaaaatgtag