Sequence
atgc intronic sequence ATGC exonic sequenceCGAGCTGCCTGAATTTCTAGGTGGTAATTGCACTTGTATGGATCGAGGTGGTTGTATGAGATCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgcttataatgtaaaacttggactctgattttcactaaatatttagtatgcttctgtgacttagcagaaacagtgtgttcatgcag
Basic information
species | Glycine max |
transcript | GLYMA14G07850.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G07850.3 (Glycine max), 5'ss of exon 8
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 7
CGAGCTGCCTGAATTTCTAGGTGGTAATTGCACTTGTATGGATCGAGGTGGTTGTATGAGATCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgcttataatgtaaaacttggactctgatt-ttcactaaatatttagtatgcttctgt--gacttagc------agaaacagt-------------gtgttcatgcag
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CCAGCTGCCAGATTTTTTCGGTGGTACTTGCACTTGTGCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAGgtggagtgcttgtgtcttcatactccacatcttattgttcgttatgtttctgttatactgatgttaaacctaactatacaggattcagctaatgatttctcagtgttcatgcag
upper sequence: GLYMA14G07850.3 (Glycine max), 5'ss of exon 8
lower sequence: AT1G75370.1 (Arabidopsis thaliana), 5'ss of exon 8
CGAGCTGCCTGAATTTCTAGGTGGTAATTGCACTTGTATGGATCGAGGTGGTTGTATGAGATCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgcttataatgtaaaacttggactctgattttcacta--aatatttagtatgcttctgtgacttagcagaaacagtgtgttcatgcag
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CCAGCTGCCAGATTTTCTTGGTGGCACTTGCACCTGTGCAGATCGAGGTGGTTGTATGAGATCTGATAAAGGCCCCTGGAATGACCCTGAGATATTAAAGgtaaaa-atcgatcttccgcagcct--attttggttaaaaagattaacaccagacagaatagtgttacttaactgat-cttccccaccttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151403337|gb|EV273147.1|EV273147EST: GTTGTATGAGATCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAG ATGGTTCTTAGTGGTGAAGTACAATGTTCTAGACAAATAGTAACAGTTTCT
genomic: GTTGTATGAGATCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgct ... gttcatgcagATGGTTCTTAGTGGTGAAGTACAATGTTCTAGACAAATAGTAACAGTTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGAGCTGCCTGAATTTCTAGGTGGTAATTGCACTTGTATGGATCGAGGTGGTTGTATGAGATCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgcttataatgtaaaacttggactctgattttcactaaatatttagtatgcttctgtgacttagcagaaacagtgtgttcatgcag
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