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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGTGCAAAATCCTATCCACTGGATGCACTTATGAGTGATTGCAGAGAATACTTTCAGCAAACTAGTAGGCGGGTTTCCTTTGAATATGCACTTTTAGgtattggatgttccaatacatactacttccttttcttataaaaagtttggtggaatccttataatgcacatgacactttcttcattatgtttgagcag

Basic information

species Glycine max
transcript GLYMA14G07450.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07450.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0019g01070.t01 (Vitis vinifera), 5'ss of exon 8
CCAAGTGCAAAATCCTATCCACTGGATGCACTTATGAGTGATTGCAGAGAATACTTTCAGCAAACTAGTAGGCGGGTTTCCTTTGAATATGCACTTTTAGgtattggatgttccaatacatactacttccttttct-------tataaaaagt--ttggtggaatccttataatgcacatgacactt-tcttcattatgtttgagcag-
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CCAAGTGCAAAGTCCTACCCTCTGGATGCAATTATGAAGGATTGCAGGGACTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaa-gtttcatttggagaaatttgtctctgtggtgcactatgggcattcatttttgaagttacaaaaacaaaaaaaaaactaatgcaaataacatctttgttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287259|gb|BI471150.1|BI471150
EST:     ATACTTTCAGCAAACTAGTAGGCGGGTTTCCTTTGAATATGCACTTTTAG                         CTGGAGTCAATGACTCGGTAGACCATGCATTAGAACTTGCTGAGTTACTTC
genomic: ATACTTTCAGCAAACTAGTAGGCGGGTTTCCTTTGAATATGCACTTTTAGgtattggatg ... gtttgagcagCTGGAGTCAATGACTCGGTAGACCATGCATTAGAACTTGCTGAGTTACTTC