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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTGAATCTTATTGGATACTGTGAAGAAGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATCTACACAgtaagtaatgtatcattttagagtaactactacattaaggagaaatgctaacaacacactttttctagcatactgtcaattattggccgaaatttgttga...

Basic information

species Glycine max
transcript GLYMA14G06230.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06230.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g18370.1 (Oryza sativa), 5'ss of exon 6
TTTGTGAATCTTATTGGATACTGTGAAGAAGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATCTACACAgtaagtaatgt-atcatttta---gagtaactactacattaaggagaaatgctaacaacacactttttctagcatactg-tcaat-tattggccgaaatttgttga
||| ||||  |  |||| || ||||| |||||| | ||||| |||||| || |||| ||||||||||| ||||| |||||||| |||||| |||| ||  ||||||  | |  ||| ||     || |  || |  ||| | |   | |   |  |   ||| ||||  | | | | || ||||  |||  ||  ||  |      
TTTATGAACTTGCTTGGCTATTGTGAGGAAGAGCAACCTTTTACCAGAGTGATGGTGTTTGAATATGCTCCAAATGGAACACTTTTTGAGTATCTGCATGgtaagtgttcttgtcagttatcatgattctcttcatcatcatgtccagaaattgtcggtacatttttatttgaacattggtcaagatatcagc--aacctca----

upper sequence: GLYMA14G06230.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g28520.2 (Oryza sativa), 5'ss of exon 2
TTTGTGAATCTTATTGGATACTGTGAAGAAGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATCTACACAgtaagtaa-tgtatcattttaga---gtaactactacattaaggagaaatgctaacaacacactttttctagcatactgtcaattattggccgaaatttgttga
|||||||| ||| |||| ||||| || || ||| |||| ||||| || ||| |||| || || || ||||||||||| |||||||| |||||||| ||| |||| |   | |   | ||| ||    || ||||| |   |    ||  || || |||  |||      | |||  ||| || | |  |   |||||       
TTTGTGAACCTTCTTGGCTACTGCGAGGAGGAGCAGCCGTTCACGAGGATGATGGTGTTCGAGTACGCCCCAAACGGCACACTATTCGAGCATCTCCACGgtaattttctttggaactttggatttctacctacttcgacaccccgacctg-tagcaa-gcacgaaaaatggca-gctgacattgacggtgggaaatgcag---

upper sequence: GLYMA14G06230.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G135359_T04 (Zea mays), 5'ss of exon 5
TTTGTGAATCTTATTGGATACTGTGAAGAAGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATCTACACAgtaagtaatgtatcattttagagt----aactactacattaaggagaaatgct----aaca-acacactttttctagcata--ctgtcaattattggccgaaatttgttga----------------------
||| ||||  |  |||| |||||||| |||||| | || || |||||| || |||| ||||||||||| ||||| || ||||| ||||||||||| ||  |||||     |    |  |    |    |  | |  |  | |  | || || |    | |    | | ||||   |  ||    | |  ||| |||  | || ||||   |                      
TTTATGAACTTGCTTGGCTACTGTGAGGAAGAGCATCCCTTTACCAGAGTGATGGTATTTGAATATGCTCCAAATGGGACACTTTTTGAGCATCTCCATGgtaagcgcgttgctgtcatgagtttctcagtttcatctgtcacaaaaactgttcttcagcgtgtagagttttatcactatgacttctgcattgttgatcaaagtttggcaatgccttcctgatttcaccgcag

upper sequence: GLYMA14G06230.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G56050.2 (Arabidopsis thaliana), 5'ss of exon 6
TTTGTGAATCTTATTGGATACTGTGAAGAAGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATCTACACAgtaagtaatgtatcattttaga-gtaactactacattaaggagaaatgctaacaacacactttttctagcatactgtcaattattggccgaaatttgttga
||||| || ||| |||| |||||||||||||| || |||||||| || || ||||| |||||||||||  ||||||||||| | ||||| ||| ||||| ||||||||   | |  |||||   ||      |   | |      | | |  ||    |    |   |  | | | |  | | ||| | | |         
TTTGTCAACCTTCTTGGTTACTGTGAAGAAGAAGAACCTTTCACTAGGATCTTGGTCTTTGAATATGCATCAAACGGAACAGTCTTTGAACATTTACACTgtaagtaacaaagctctttagtcatatgagtcattattacactgtaagttgtcagattaaaagtgggaaaacaatatttacttttg-ctgcag--------

upper sequence: GLYMA14G06230.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G40270.1 (Arabidopsis thaliana), 5'ss of exon 5
TTTGTGAATCTTATTGGATACTGTGAAGAAGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATCTACACAgtaagtaatgtatcattttagagtaactactacattaaggagaaatgctaacaacacactttttctagcatactgtcaattattggccgaaatttgttga
||||  || ||| |||| || ||||||||| |||| ||||||||||| || ||| | ||||| ||||| ||||| ||| |||| ||||||||| ||||  || |||| | |    | | | |  | |  | |  ||      |  |  |    |     | |    || |     ||| || || |    |         
TTTGCAAACCTTCTTGGTTATTGTGAAGAAAAGGAACCTTTCACCAGGATCTTGATCTTTGAGTATGCTCCAAATGGATCACTCTTTGAGCATTTACATTgtgagtacttt----tgtcacacaatcagccatgttggcttcatttctttgtga-----tctaaagagaagctaatcatttttttgttacag--------

upper sequence: GLYMA14G06230.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0067g01550.t01 (Vitis vinifera), 5'ss of exon 8
TTTGTGAATCTTATTGGATACTGTGAAGAAGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATCTACACAgtaagtaatgtatcattttagagtaactactacattaaggagaaatg---ctaacaacacactttttctagcatactgtcaattattggccgaaatttgttga-
||||| || ||| | ||||| |||||||||||||| ||||||||||||||| |||||||||||||||| || || ||||| || ||||||||| |||| |||||| |    ||  ||||    | |  | |   ||||   ||  |     ||    || | |     ||  |    |  | ||| |  |   | |  ||||| 
TTTGTCAACCTTCTCGGATATTGTGAAGAAGAGGAACCTTTCACCAGAATGATGGTTTTTGAATATGCTCCGAATGGAACGCTTTTTGAGCATTTACATAgtaagcatcaaattctttttc--ttatcattttcttaaaaggactttaatttatggtcaaaatcaggatataacttggcaagttact--ctatattcagttgat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058398|gb|CA801312.1|CA801312
EST:     TTTTGAATATGCCCCAAACGGAACACTATTTGAGCATCTACACA                         TAAAAGAGGCTGAGCACTTGGATTGGGGAACAAGACTTAGAGTTGCAACGG
genomic: TTTTGAATATGCCCCAAACGGAACACTATTTGAGCATCTACACAgtaagtaatg ... tgaattccagTAAAAGAGGCTGAGCACTTGGATTGGGGAACAAGACTTAGAGTTGCAACGG