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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAATAGATCTTCTGAATGGAGAAACCAGATTTTTGCAAACAGATATTATTTACGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAGgtaagctaactacatattttcaatgcaagctcagccctaaccaaggaataacacaagaattgggtccaaaaatagctttaattaacacaacttctcacat...

Basic information

species Glycine max
transcript GLYMA14G04950.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G04950.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G27150.2 (Arabidopsis thaliana), 5'ss of exon 8
GTGGAAATAGATCTTCTGAATGGAGAAACCAGATTTTTGCAAACAGATATTATTTACGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAGgtaagctaactacatattttcaatgcaagctcagccc-taaccaaggaataacacaa--gaattgggtccaaaaata-gctttaattaacacaacttctcacat
|||||| | || ||| |||  ||| |||||    ||||   | | ||||||||||| || |||||| ||||||| || ||||| || |||||||||||||| ||||| |      ||  |    |||| |   |   |   |    | | |       ||  |  |   ||||| | | |||  ||   | ||          
GTGGAAGTGGACCTTGTGACAGGAAAAACCGAGATTTTAAGATCCGATATTATTTATGACTGTGGAAAGAGTCTTAATCCTGCAGTTGATTTAGGACAGgttagctagcatttagttaactccacaagtttttcttgttttcttttagtcattttgttgagctaagcaaaaaaacatggtttgtttttgaaaag---------

upper sequence: GLYMA14G04950.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G20960.2 (Arabidopsis thaliana), 5'ss of exon 8
GTGGAAATAGATCTTCTGAATGGAGAAACCAGATTTTTGCAAACAGATATTATTTACGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAGgt--aagctaactacatattttcaatgcaagctcagccctaaccaaggaataacacaagaattgggtccaaaaatagctttaattaacacaacttctcacat
|| ||| || |  || |||  |||||||| |   |  |||  ||||||||||| || ||||||||  ||||||| || || ||||| ||||||||||||||   ||| |   |   | | |   |||    | |      |        |  ||  |   |    |   |   |   |||  || |||             
GTTGAAGTAAACGTTTTGACGGGAGAAACAACGATCCTGCGTACAGATATTATCTATGATTGTGGGAAGAGTCTCAATCCCGCTGTTGATTTAGGACAGgttagagccaggaaaccactctatgtgccgttttatgttatattgttctgtttcatgattctcttattttattttg--ttttgtttacag------------

upper sequence: GLYMA14G04950.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0041g02390.t01 (Vitis vinifera), 5'ss of exon 7
GTGGAAATAGATCTTCTGAATGGAGAAACCAGATTTTTGCAAACAGATATTATTTACGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAGgtaagct-aactacatattttcaatgcaagctcagccctaaccaaggaataacacaagaattgggtccaaaaatagctttaattaacacaacttctcacat-
|||||| || ||||||| | ||||||||||| | |||||||| | |||||||| || || ||||| || || || |||||||||||||||||||||||||| |||  |||||||   ||  |||      |   || |  |         |  |   |  |  |   ||  | | ||| |||| | |    | ||  ||| 
GTGGAAGTAAATCTTCTCACTGGAGAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGGCAAAGCCTCAACCCTGCTGTGGATTTAGGACAGgtcagcccaactacaatcttaaaatattctgttt-ccttctctgcttttctattcctaagctttgattaatcacaacttgaattca-atttttacttccatt

upper sequence: GLYMA14G04950.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0009g00770.t01 (Vitis vinifera), 5'ss of exon 8
GTGGAAATAGATCTTCTGAATGGAGAAACCAGATTTTTGCAAACAGATATTATTTACGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAGgtaagct-aactacatattttcaatgcaagctcagccctaaccaaggaataacacaagaattgggtccaaaaatagctttaattaacacaacttctcacat----
|||||  || ||||||| | |||||||||||   |||||||| | |||||||| || || ||||| ||||| || |||||||||||||||||||||||||| |||  || ||||   ||  |||   |  |   |            |||   | |   || |||  ||  | | ||  ||||    ||| || | | ||    
GTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaattacaatgttaaaatattatatttccttctctgcttttatattcctaagttttggtt-aattacaactcaaatt----caatttttaatatttca

upper sequence: GLYMA14G04950.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0041g02430.t01 (Vitis vinifera), 5'ss of exon 8
GTGGAAATAGATCTTCTGAATGGAGAAACCAGATTTTTGCAAACAGATATTATTTACGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAGgtaagct-aactaca-tatttt-caatgcaagctcagccctaaccaaggaataacacaagaattgg-gtccaaaaatagctttaattaacacaacttctcacat-
|||||  || ||||||| | |||| |||||| | |||||||| | |||||||| || || ||||| |||||||| |||||||||||||||||||||||||| |||  ||||||| ||||   | ||   | |||   |    |      ||  |  |||  ||||  | |||      || | |||      | |   ||||| 
GTGGAGGTAAATCTTCTCACTGGACAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaactacaatattaaactatttcatctccttctctgcttttctatc-cctaagctttggcattcaacctcttctctgatt----ttattctccacatc

upper sequence: GLYMA14G04950.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0041g02410.t01 (Vitis vinifera), 5'ss of exon 7
GTGGAAATAGATCTTCTGAATGGAGAAACCAGATTTTTGCAAACAGATATTATTTACGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAGgtaagct-aactacatattttca--atgcaagctcagccctaaccaaggaataacacaagaattgggtccaaaaatagctttaattaacacaacttctcacat-
|||||  || ||||||| | |||| |||||| | |||||||| | |||||||| || || ||||| |||||||| |||||||||||||||||||||||||| |||  |||||||   ||  |  ||   | |||   |   ||      ||  |  |||  ||||     ||  |    ||   | |    | |   ||||| 
GTGGAGGTAAATCTTCTCACTGGACAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaactacaatgttaaactatttcatctccttctctacttttctatc-cctaagctttggcattcaacct---cttccctgattttattctccacatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203143|gb|BI425911.1|BI425911
EST:     TTATTTATGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAG                         ATTGAAGGAGCTTTTGTCCAGGGGTTGGGATTTTTCATGCTTGAAGAATAC
genomic: TTATTTACGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAGgtaagctaac ... tatcctgcagATTGAAGGAGCTTTTGTCCAGGGGTTGGGATTTTTCATGCTTGAAGAATAC
EST: gi|7283564|gb|AW596170.1|AW596170
EST:     TTATTTACGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAG                         ATTGAAGGAGCTTTTGTCCAGGGGTTGGGATTTTTCATGCTTGAAGAATAC
genomic: TTATTTACGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAGgtaagctaac ... tatcctgcagATTGAAGGAGCTTTTGTCCAGGGGTTGGGATTTTTCATGCTTGAAGAATAC