Sequence
atgc intronic sequence ATGC exonic sequenceTGAAAGTCTTGTCACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagttgtgctgcttgattctcccaccccaaaaaagacacttgtgctgcttgatttgtacatgaaaatgagtggtcatagattttgacatcagttcttgtttcaaaaaatatttaatttgatggattatgtcctctag
Basic information
species | Glycine max |
transcript | GLYMA14G02380.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os09g33500.1 (Oryza sativa), 5'ss of exon 8
TGAAAGTCTTGTCACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagttgtgctgcttgattctcccaccccaa--aaaagacacttgtgctgcttgatttgtacatgaaaatgagtggtcatagattttgacatcagttcttgtttcaaaaaatatttaatttgatggattatgtcctctag
| || || || |||||||| | |||||||||||||| ||||| |||||||| || ||||| || || |||||||||||| | ||||||||| || |||| | | || | | | | | | | || || | || | || | | | | |
TTAAGGTTCTGGTTCCATATTCTGCAGAAGATGCTCGTGGCTTGCTCAAAGCTGCGATTAGGGATCCGGACCCTGTTGTTTTCTTGGAAAATGAACTGCTgtatggaacatgatcttgttatgctatactgactagccgtcatttccccaagatg-ctgatatactattttctgcag----------------------------------------------------------------
upper sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os08g42410.2 (Oryza sativa), 5'ss of exon 6
TGAAAGTCTTGTCACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagttgtgctgcttgattctcccaccccaaaaaagacacttgtgctgcttgatttgtacatgaaaatgagtggtcatagattttgacatcagttcttgtttcaaaaaatatttaatttgatggattatgtcctctag
|||| ||| | | || ||||| | ||||||||||| || ||||| ||||| || || ||||| || || |||||||||||| | ||||||||| || |||| |||| | | ||| ||| || | | | |||||||| ||| | ||| | || |||| ||
TGAAGGTCCTAACTCCTTATTCTGCAGAAGATGCTCGGGGCTTGCTAAAAGCAGCAATCAGGGATCCAGACCCTGTTGTTTTCTTGGAAAATGAACTGCTgta--------tgctagcctttccttccc----aattatattctctaaatttgatttgc-catttcactgaatagt---gtatttctgcag------------------------------------------------
upper sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G097226_T02 (Zea mays), 5'ss of exon 8
TGAAAGTCTTGTCACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagttgtgctgcttgattctcccaccccaaaaaagacacttgtgctgcttgatttgtacatgaaaatgagtggtcatagattttgacatcagttcttgtttcaaaaaatatttaatttgatggattatgtcctctag
| || || | ||||||| || || |||||||| || || ||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||| |||| || | |||| | | ||| ||| | | | || ||||| || ||||| ||||
TTAAGGTTCTCACACCATACTCTTCAGAAGATGCCCGAGGCTTGCTCAAAGCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCTgtatgtca----gtctgatcttgttaaaccat------tttgctagctacctatcatttagctgaaa-tgctctatcataccatttgcag-------------------------------------------------
upper sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G128121_T01 (Zea mays), 5'ss of exon 2
TGAAAGTCTTGTCACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagttgtgctg--cttgattctcccaccccaaaaaagacacttgtgctgcttgatttgtacatgaaaatgagtggtcatagattttgacatcagttcttgtttcaaaaaatatttaatttgatggattatgtcctctag
| || || | ||||||| || || |||||||| || || ||||||||||||||||| ||||| |||||||||||| ||||| | |||||||||||| |||| || ||| |||| | | | | | | | |||| | || | || | |
TTAAGGTTCTCACACCATACTCTTCAGAAGATGCCCGAGGCTTGCTTAAAGCTGCTATTAGGGATCCTGATCCTGTTATTTTCTTGGAAAATGAATTGCTgtatgtcagtctgatcttgttgaatcattttgctagctgcctatcattttgctgagatgctattgtaccatttgcag----------------------------------------------------------------
upper sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G043198_T03 (Zea mays), 5'ss of exon 8
TGAAAGTCTTGTCACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagttgtgctgcttgattctcccaccccaaaaaagacacttgtgctgcttgatttgtacatgaaaatgagtggtcatagattttgacatcagttcttgtttcaaaaaatatttaatttgatggattatgtcctctag
||||||| | | |||||||| | ||||||||||| |||||||| ||||| || || ||||| || ||||||||||| ||||||||||||||| | |||| | || | | ||| || | | || || ||| |||| | | | | | | | ||| | |||
TGAAAGTTCTAGCTCCATATTCTGCAGAAGATGCTCGAGGTTTGCTGAAAGCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatgtctttctgtgctc-------aactatattctctatgttgtttg-tttgaattgacatctcattatataatgcattttcctgcag---------------------------------------------
upper sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 8
lower sequence: AT5G50850.1 (Arabidopsis thaliana), 5'ss of exon 9
TGAAAGTCTTGTCACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagttgtgctgcttgattctcccaccccaaaaaagacacttgtgctgcttgatttgtacatgaaaatgagtggtcatagattttgacat-cagttcttgtttcaaaaaatatttaatttgatggattatgtcctctag
|||||||| | | || |||||| ||||||||||||||||| | ||||||||||| || || |||||||| |||||||| ||||||||||| || || ||||||| || | | | ||| | | | | | | | || | | || | | | | || ||||| ||| |||
TGAAAGTCCTTGCTCCGTATTCAGCTGAAGATGCTCGTGGTCTTCTTAAAGCTGCCATTAGAGACCCTGACCCTGTTGTCTTCCTTGAAAACGAGTTACTgtaagtagtatt-cctaatttg---agttcttgcatgtgattagagcctacggtctcatatcagtacctccttaa--attgatttcatcatgcag---------------------------------------------
upper sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv17s0000g00690.t01 (Vitis vinifera), 5'ss of exon 8
TGAAAGTCTTGTCACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagt--tgtgctgcttgattctcccaccccaaaaaagacact-tgtgctgcttgatttgtacatgaaaatgagtggtcatagattttgacatcagttcttgtttcaaaaaatatttaatttgatggattatgtcctctag
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TGAAGGTGCTGGTTCCATATTCATCAGAGGACGCTCGGGGCCTGTTAAAAGCTGCTATAAGGGACCCTGACCCTGTTGTTTTCCTTGAAAACGAATTGCTgttagtgttttgatgcttgagatttct-ctgtaattggatcattgtatacttactcatccttgagttgaatttcatg-ctgcag----------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151398119|gb|EV267997.1|EV267997EST: GCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTT ATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTG
genomic: GCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagttgtg ... tgtcctctagATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAAGTCTTGTCACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagttgtgctgcttgattctcccaccccaaaaaagacacttgtgctgcttgatttgtacatgaaaatgagtggtcatagattttgacatcagttcttgtttcaaaaaatatttaatttgatggattatgtcctctag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT