Sequence
atgc intronic sequence ATGC exonic sequenceTACAATTACAATGGTGGTCCTTGCTATCGATGCCTCTTTCCAACTCCACCACCTAGAACAGCATGCCAAAGTTGTGCTGAGGGTGGAGTTCTAGGAGTAGgtaaaattactactgtctttgtgaactgcatcagttttacttctcattgctagtctgcgagacatttacataagcatgaacaatgtgaaccataagacta...
Basic information
species | Glycine max |
transcript | GLYMA14G02260.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G02410.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G160842_T02 (Zea mays), 5'ss of exon 8
TACAATTACAATGGTGGTCCTTGCTATCGATGCCTCTTTCCAACTCCACCACCTAGAACAGCATGCCAAAGTTGTGCTGAGGGTGGAGTTCTAGGA----GTAGgtaaaattacta----ctgtcttt-gtgaactgcatcagttttacttctcattgctagtctgcgagacatttacataagcatgaacaatgtgaaccataagacta
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TATCATCATAATGGAAGCCCATGCTATCGGTGCCTCTTTCCAACTCCACCACCTGTGGCAGCCTGCCAGAGATGCTCAGACAGTGGTGTCCTTGGGGTTGgtaggtgacactgtagaagctcgtcattagtacggtggacaaaaacttatattt-ttgtcaacctgtttaaaattcgt-caatctttgtttatatgatgtgt-------
upper sequence: GLYMA14G02410.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G157836_T03 (Zea mays), 5'ss of exon 9
TACAATTACAATGGTGGTCCTTGCTATCGATGCCTCTTTCCAACTCCACCACCTAGAACAGCATGCCAAAGTTGTGCTGAGGGTGGAGTTCTAGGA----GTAGgtaaaattacta----ctgtcttt-gtgaactgcatcagttttacttctcattgctagtctgcgagacatttacataagcatgaacaatgtgaaccataagacta
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TATCATCATAATGGAAGCCCATGCTATCGGTGCCTCTTTCCAACTCCACCACCTGTGGCAGCCTGCCAGAGATGCTCAGACAGTGGTGTCCTTGGGGTTGgtaggtgacactgtagaagctcgtcattagtacggtggacaaaaacttatattttttgtcaacctgtttaaaattcat-caatctttgtttatatgatgtg--------
upper sequence: GLYMA14G02410.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv19s0090g01020.t01 (Vitis vinifera), 5'ss of exon 8
TACAATTACAATGGTGGTCCTTGCTATCGATGCCTCTTTCCAACTCCACCACCTAGAACAGCATGCCAAAGTTGTGCTGAGGGTGGAGTTCTAGGAGTAGgtaaaattactactgtctttgtgaactgcatcagttttacttctcattgctagtctgcgagac-atttacataagcatgaacaatgtgaaccataagacta---------
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TACAATTACAAAGGAGGTCCATGCTATCGGTGCCTTTTTCCTACTCCACCACCAACAACAGCATGTCAAAGATGTTCAGATAGTGGAGTTTTAGGAGTAGgtaag----ctgcagt-tttgctaacatgtccaatattaa-----attactagtctgctaacttgcctaccaaaccttgtaaaatatgatcttgagagggatcttttcctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18690719|gb|BM519567.1|BM519567EST: ACCTAGAACAGCATGCCAAAGTTGTGCTGAGGGTGGAGTTCTAGGAGTAG TTCCTGGTATAATTGGCTGTCTCCAAGCTCTTGAGGCTATTAAGATTGCAG
genomic: ACCTAGAACAGCATGCCAAAGTTGTGCTGAGGGTGGAGTTCTAGGAGTAGgtaaaattac ... tcattttcagTTCCTGGTATAATTGGCTGTCTCCAAGCTCTTGAGGCTATTAAGATTGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACAATTACAATGGTGGTCCTTGCTATCGATGCCTCTTTCCAACTCCACCACCTAGAACAGCATGCCAAAGTTGTGCTGAGGGTGGAGTTCTAGGAGTAGgtaaaattactactgtctttgtgaactgcatcagttttacttctcattgctagtctgcgagacatttacataagcatgaacaatgtgaaccataagacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG