Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCGgttagtttccctgagtcaatttaatttaatttctctttaaagactagactagtattgtgtggtgtgactcttatttttggtctttgacag

Basic information

species Glycine max
transcript GLYMA13G44040.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019349|gb|CX706091.1|CX706091
EST:     TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCG                         ACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
genomic: TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCGgttagtttcc ... tctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
EST: gi|9983172|gb|BE657280.1|BE657280
EST:     CAAGATACTACGACAGGATGGCG                         ACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
genomic: CAAGATACTACGACAGGATGGCGgttagtttcc ... tctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
EST: gi|58016331|gb|CX703073.1|CX703073
EST:     TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCG                         ACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
genomic: TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCGgttagtttcc ... tctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
EST: gi|213591272|gb|DB983014.1|DB983014
EST:     TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCG                         ACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
genomic: TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCGgttagtttcc ... tctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
EST: gi|6747235|gb|AW317691.1|AW317691
EST:     AAGATACTACGACAGGATGGCG                         ACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
genomic: AAGATACTACGACAGGATGGCGgttagtttcc ... tctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCGgttagtttccctgagtcaatttaatttaatttctctttaaagactagactagtattgtgtggtgtgactcttatttttggtctttgacag

- - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - -  AGGATG