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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAATTGATCAACTTGCCTATTGTATAAATAGTTATAGAGAAGCTGCAATGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggttactgctctgattatgtatcacttttttttcctggttgccatttagctgagattattttccgttttatttgttatcag

Basic information

species Glycine max
transcript GLYMA13G43630.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43630.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g08560.2 (Oryza sativa), 5'ss of exon 8
AGTAATTGATCAACTTGCCTATTGTATAAATAGTTATAGAGAAGCTGCAATGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgta--------attggttactgctctgattatgtatcacttttttttc--ctggttgccat-ttagctga--gattattttccgttt-tatttgttatcag
    || || |||||||| || ||||| || ||||  ||||| |||||  |||| || ||||| ||||||||||||||||| ||  | |||||||| ||||||        ||    |||     |       ||||  || | | |   ||| |||| ||  ||| | |   | ||  ||| | |  |   || || || 
TTCCATCGACCAACTTGCTTACTGTATCAACAGTTTCAGAGATGCTGCCTTGTCCAAAGATCCGAAGTTTGATCACATTGAGATGGAGGAGAAACAGAAGgtattcaatgcatcaactacaaaattagcacaatatcttttctctatacactgattgcaatgctagttcacgaactacgttctgctagtgaatggtaaca-

upper sequence: GLYMA13G43630.2 (Glycine max), 5'ss of exon 8
lower sequence: AT1G79920.1 (Arabidopsis thaliana), 5'ss of exon 8
AGTAATTGATCAACTTGCCTATTGTATAAATAGTTATAGAGAAGCTGCAATGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtta--ctgctctgattatgtatcacttttttttcctggttgccatttagctgagattattttccgttttatttgttatcag------------
 || |||||||| |||| ||| ||||| || || || ||||| || ||  |||| ||||||||||||||||||||||||||  |    ||||| |||||||||||   |           ||    | |  ||   | ||   |         || | | | ||  |||    | |  |||||| |               
GGTCATTGATCAGCTTGGCTACTGTATTAACAGCTACAGAGAGGCAGCTGTGTCTAATGATCCCAAGTTTGATCACATTGAATTGGCAGAGAAGCAAAAGgtaataattcggctcatctcgaaagcgcagaacaaatcttaaatttcacaggcttgggtaaaatggtttgaaatgtgttttgttcttgtgcaatgattaag

upper sequence: GLYMA13G43630.2 (Glycine max), 5'ss of exon 8
lower sequence: AT1G79930.1 (Arabidopsis thaliana), 5'ss of exon 8
AGTAATTGATCAACTTGCCTATTGTATAAATAGTTATAGAGAAGCTGCAATGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtta---ctgctctgattatgtatcacttttttttcctggttgccatttagctgagattattttccgttttatttgttatcag---------
 || |||||||| ||||  || ||||| || || || ||||| || || ||||| | ||||||||||||||||||||||||  |    ||||| |||||||||||   ||    |     ||       |  |    | ||   |   |     || |  || ||| |||   ||||| || ||| | |          
GGTCATTGATCAGCTTGGTTACTGTATTAACAGCTACAGAGAGGCAGCTATGTCTACTGATCCCAAGTTTGATCACATTGAATTGGCAGAGAAGCAAAAGgtaataatttggctcaatcttggaagcacaaaaaaaatcttaaatttctcaggcttggg-gaaattgtttgatgttttgtt-gttgtgaaatgattaag

upper sequence: GLYMA13G43630.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 7
AGTAATTGATCAACTTGCCTATTGTATAAATAGTTATAGAGAAGCTGCAATGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggttactgctctgattatgtatcacttttttttcctggttgccatttagctgagattattttccgttttatttgttatcag----------------------------------------------------------------------
|||  ||||||||||||  |||||||| |||||||| ||||| || |||||||| ||||||||||||||||| ||||| ||  ||   || ||||| |||||||| | || |||   || || |  ||   || || |||    |   |   ||||     | |    ||  | ||  ||  |                                                                          
AGTGGTTGATCAACTTGTTTATTGTATCAATAGTTACAGAGAGGCAGCAATGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagatt-ctgtattgtttgtaaattgattattcttcaaaatgctcccctagcct--ctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254322029|gb|GR837443.1|GR837443
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|192294395|gb|FG987324.1|FG987324
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|207834617|gb|GD805482.1|GD805482
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|207735431|gb|GD710274.1|GD710274
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|11117948|gb|BF219541.1|BF219541
EST:     TGTCAAATGATCCCAAGTTTGNNNNNATTGACATCAATGAGANNNAAAAG                         GTCTTAAATGAATGTGTNNNAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|23730841|gb|BU763524.1|BU763524
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|11687354|gb|BF595030.1|BF595030
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|6094746|gb|AW119475.1|AW119475
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|298183420|gb|HO028633.1|HO028633
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|192301840|gb|FG997698.1|FG997698
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|254322030|gb|GR837444.1|GR837444
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|298166695|gb|HO010134.1|HO010134
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|298169033|gb|HO020393.1|HO020393
EST:     GTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: GTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|22931443|gb|BU548582.1|BU548582
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAN                         NNCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|8827941|gb|BE211671.1|BE211671
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|192301841|gb|FG997699.1|FG997699
EST:     CCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: CCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: gi|6963487|gb|AW432180.1|AW432180
EST:     TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAG                         GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
genomic: TGTCAAATGATCCCAAGTTTGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgttatcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG