Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacattcttttgtggttatcttattcgttcctgacgaataagtatcccattcctcccataaggctttcagtcttcagattttaacaaatgttgaa...

Basic information

species Glycine max
transcript GLYMA13G42800.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g36770.2 (Oryza sativa), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacattcttttgtg---gttatct----tattcgttcctgacgaat---aagtatcccattcctcccataaggctttcagtcttcagattttaacaaatgttgaa------------------------------------------------------------
|||| || |||||||||||| |||| |||||||||||||||||||| ||||| ||  ||||  |||| |||||||| || |||||    ||| ||||  ||| ||||  |  | || ||    ||| ||     |||   |||    | |    | |||  |     || |  |      ||  | |||  |  |  |  | ||  |  |                                                            
ACCCAACTCATTGTAATACACTGGCCTATAGCAGTTCAAAGGGTTCTATCCGACTCATTGATCTGCGACAATCAGCTTTGTGTGACAACCATTCCAAGATgttagtaattcatcttatgccttttacctgcaacattttatccgtgtgtactggaggtagtcgtggacttcttttgacggttgggacttggggctgcataagattctctattctatactagtaatagaatgtcacaatatcagcatgagataacaagaacctttaaacag

upper sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagta--cattcttttgtggttatcttattcgttcctgacgaataagtatcccattcctcccataaggctttcagtcttcagattttaacaaatgttgaa----------------------------
||||||| || |||||||||||||| ||||| || |||||||| || || || ||||||||| || |||| |||||  | |||||  ||||| || || ||| |||   ||||  ||  |  |  |||| |||  |  | |  |     |||     |   |   |   |  ||      ||   ||   || | | || |                             
ACCCTACTCACTGTAATACATTGGCTTATAGTAGCTCAAAGGGCTCCATTCGACTTGTTGACCTGAGGCAGTCAGCCCTTTGTGACACTCATTCCCAAGTgtgagttttcatttgttactcatactctttttcaatattcaacatagtttatttggatgagcatctggtggattggcctgtcttgttcgtactattttttattatagctattcctattctatgtgtgtag

upper sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacattcttttgtggtt---------atcttattcgttcctgacgaataagtatcccattcctcccataaggctttcagtcttcaga-----ttttaacaaatgttgaa--------------------------------------------
|||| || |||||||||||||| || ||||| || || ||||| || ||| | ||| ||||  |||||||||||||| |||||||    ||||| ||  ||| |||| |  |  |||   ||         |  ||  || ||  | |  |  || | | | ||       | || | |   | | ||   |     |||| | |    |  ||                                            
ACCCAACTCATTGTAATACATTAGCCTATAGTAGCTCGAAGGGCTCTATCAGGCTTATTGATCTGCGGCAATCAGCACTATGTGACAACCATGCTAAGTTgttagta-acccccttgcacttcctaatggaacatttatcattgtttagaaggaaatgttcgatggaattaa-aaagttgcaaatgtttgaagttaatttttatatggataaaatttgcacaagctgttctctaaaataaagtgcgcattctgtgcag

upper sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 9
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacattcttttgtggttatct--tattcgttcctgacgaataa-gtatcccattcctcccataaggctttcag----tcttcagattttaacaaatgttgaa
| ||  | |||||||||||| |||| ||||| |||||||||||||| ||||| ||| ||||  |||| ||||||||| | |||||    ||| | ||| ||| ||||    |   |     |  ||   |||   ||||   |  |     |    |   ||   || | |  ||  |    | | ||| | || |   |       
ATCCATCCCATTGTAATACACTGGCCTATAGTAGTTCAAAGGGTTCTATCCGACTTATTGATCTGCGTCAATCAGCACTGTGTGACAACCATTCAAAAATgttagtaaccccccataactctccctaacattttatccttttgtctggcaaagttgagaacttgtatgaaggattgggaatatgtgcagttatttatgga-------

upper sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacattcttttgtggttatcttattcgtt-cctgacgaat---aagt--atcccattcctcccataaggctttcagtcttca------gattttaacaaatgttgaa---------
| ||||| ||||| ||||||||||| ||||| || || ||||| || || || ||||||||  |||||||||||||  | || ||   |||| || || ||| ||  | ||  |||     || | ||| |  | | ||  ||||   ||||  || |    | || ||     | |  |   |||        ||||  | |  |||||           
ATCCTACTCATTGCAATACATTGGCGTATAGTAGCTCTAAGGGCTCCATTCGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACAATCATTCCCAAATgtgag--cttttatttcacactaacatatactctacttggagaatatcaagtgaatactgcccttctcaattatcctataagtttcgttgtactatttctatacctgttgtcttcttgtag

upper sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 8
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacattcttt--tgtggttatcttattcgttcctgacgaataagtatcccattcctcccataaggctttcagtcttcagattttaaca-aatgttgaa
||||||| |||||||| |  || |||||||| |||||||| || |||||||| |||  ||| ||||| || |||||| | |||||||||||| | ||| ||| |||   ||  ||  | | || || ||  |  ||  | |    |    |    ||        | | |     ||   ||| ||   || | |||      
ACCCTACCCATTGTAACATGTTAGCATATAGTAGTTCAAAAGGCTCAATCCGCCTTAATGATTTGCGACAGTCAGCACTGTGTGATTCTCATTCTAAATTgtgagtggcttgcttgttttagtcatttttattttttttcatttgtcttaaaataatataataggtgaaggag--agaaatcaaatggcaatagaataactc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7686354|gb|AW757002.1|AW757002
EST:     CGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacat ... tttgatgcagATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTAT
EST: gi|18730643|gb|BM525996.1|BM525996
EST:     CGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacat ... tttgatgcagATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTAT
EST: gi|19936402|gb|BQ080848.1|BQ080848
EST:     CGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacat ... tttgatgcagATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTAT
EST: gi|5770902|gb|AI974076.1|AI974076
EST:     CGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacat ... tttgatgcagATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTAT
EST: gi|21887329|gb|BQ740542.1|BQ740542
EST:     CGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTAT
genomic: CGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacat ... tttgatgcagATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTAT
EST: gi|193711274|gb|FK646095.1|FK646095
EST:     GTCTTGTTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACT                         ATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTAT
genomic: GTCTTG-TTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacat ... tttgatgcagATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTAT