Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGgtgtgaaagcaaaatgttgctgcttgttttgataattctaaatatttttctgtgtttcatttttgtattgtttatatatcttcatttactatgatgtgatcaaccttttccattcatag

Basic information

species Glycine max
transcript GLYMA13G42650.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42650.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g39310.3 (Oryza sativa), 5'ss of exon 7
GTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGgtgtgaaagcaaaatgttgctgcttgttttgataatt--ctaaatatttttctgtgtttcatttttgtattgtttatatatcttcatttactatgat--gtgatcaaccttttccattcatag---
|| |||||||||||||| |||||||| ||||| ||| |||||||||| || ||||||||  |||||||| |        | | |||   ||    || || ||  || |  |  |  | |   | |   | || | |    ||  |  |  || ||||   |           || ||||  || | |    
GTTATGATGAGATTGTTCAGTCCACGTAAAACGACATTGTTGTTTGTTATTCGTGATAAATCAAAGgtgagggcttgctagggtgcaatttaggctgttagtttcctgagaaactaccagcagtcctactatgaactccaaatccaaatctatgtactgcaactaacatgtgcccatttcggtttacaacag

upper sequence: GLYMA13G42650.1 (Glycine max), 5'ss of exon 8
lower sequence: AC196426.3_FGT007 (Zea mays), 5'ss of exon 6
GTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGgtgtgaaagcaaaatgttgctgcttgttttgataattctaaatatttttctgtgtttcattt-ttgtattgtttatat-atcttcatttactatgatgtgatcaaccttttccattcatag
||||||||||| ||||| ||||| |||||||||||| |||||||||| |||||||| ||  ||| |||  |           ||| | | |||   ||  | ||||  |   |||     ||| |||| ||||||  |   |||   || | |||  | |  ||                       
GTCATGATGAGGTTGTTCAGTCCTCGCAAAACAACATTGTTGTTTGTTATACGTGACAAATCAAGGgtaagggcttgc----ttgttacatgt---gaacaatctactttccttttcacatttgatttcttgtatactaactattggctccttttggtttcttgcag--------------------

upper sequence: GLYMA13G42650.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G72960.1 (Arabidopsis thaliana), 5'ss of exon 7
GTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGgtgtgaaagcaaaatgttgctgcttgttttgataattctaaatatttttctgtgtt-tcatttttgtattgtttatatatcttcatttactatgatgtgatcaaccttttccattcatag
|| |||||| |||||||||||||||| |||||||||||| ||||||| ||||| ||||| ||   |||       ||   | ||  |  || |||  || |||||   ||  || | |  || | |    |   | ||  ||| ||  ||  ||   ||||| |   |  |               
GTGATGATGCGATTGTTTAGTCCACGTAAAACAACAATGCTGTTTGTAATACGAGATAAAACCCGGgta------cactctcttcttttttctttgtatcattcttcttacattgcagatttgtaacagctaactggtacatacattgtctattg--atgattttggctgcag-------------

upper sequence: GLYMA13G42650.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 7
GTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGgtgtgaaagcaaaatgttgc--tgcttgttttgataattctaaatatttttctgtgtttcatttttgtatt-gtttatatatcttcatttactatgatgtgatcaaccttttccattcatag-------------
|| |||||| |||||||||||||||| ||||||||  || ||||||| || |||||||| |||| ||||||    |    |  |||  |  ||| | | ||| | | |   ||   |  || ||| | || | | || |||| | ||  |  |  || || | || | | ||| ||      | ||               
GTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGGgtgtgttttctctcttgtgccttatttgatgttatagtgcgagggatagcta-gtattttagttgtatgtttgtttgtttaagtg-agatattaaggtgagctgaactttaagtgctgattttttttgtatacag