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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAGATTTGTAGAAGGAAAGAAAACCAGAGATGAGGCTGACCAGCCATGTATTTTGCTTATTGATGAACTTGATCTTCTAGTAACCAGAAACCAGTCGgtaatctaccaatcctacaatgggaaaattggcattaggttgcattctttaaaacatgtaatcacattgtgatgaattttccttttttcacag

Basic information

species Glycine max
transcript GLYMA13G41490.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41490.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g00530.t01 (Vitis vinifera), 5'ss of exon 8
TGAGAGATTTGTAGAAGGAAAGAAAACCAGAGATGAGGCTGACCAGCCATGTATTTTGCTTATTGATGAACTTGATCTTCTAGTAACCAGAAACCAGTCGgtaatctaccaatcctacaatgggaaaattggcattaggttgcattctttaaaacatgtaatcacattgtga----tgaattttccttttttcacag-------------------
|||| |||||| ||| | ||  ||||      | ||||    || ||| |||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||  |     || || ||      | |   |  |   |    | | || | |  | ||     | ||| |    |  |   || | | | ||||                    
TGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGGAGATCCGGCCTTGTATTCTACTTATTGATGAACTTGATCTTCTCGTAACCAGAAATCAGTCGgtaacttgtttgtcataaaacatactagtaatcgcttt-tcatttacatttacatttttatatgtactgtaaagtttagaaactcttatgtccacaatccttgcttcttattacag

upper sequence: GLYMA13G41490.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g02050.t01 (Vitis vinifera), 5'ss of exon 9
TGAGAGATTTGTAGAAGGAAAGAAAACCAGAGATGAGGCTGACCAGCCATGTATTTTGCTTATTGATGAACTTGATCTTCTAGTAACCAGAAACCAGTCGgtaatctaccaatcctacaatgggaaa-------------------attggcattaggttgcattctttaaaacatgtaa--tcacattgtgatgaattttccttttt-tcacag
|||| |||||| ||| | ||  ||||      | ||||    || ||| |||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||  |     || || ||     ||                   ||| |||||    |   | || | ||   |  ||  ||  ||    ||||   || ||| || | ||||
TGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGGAGATCCGGCCTTGTATTCTACTTATTGATGAACTTGATCTTCTCGTAACCAGAAATCAGTCGgtaacttgtttgtcataaaacatacaagtaatcacttttcatttacatttgcatttttatatgtcctgtgaagtttagaaactcttatgtccatgatccttgcttcttattacag