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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtaggttccttcatttcattctcaacttgctaaagagcttcttaaatggaactatttctgtcaatatgactacaaactctaatttaacggagatatatgtatcctttgatacatattcataaagatgtagactgagaacttaaatatatgataatatcag

Basic information

species Glycine max
transcript GLYMA13G40960.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 6
GATTTTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtaggttccttcatttcattctcaacttgctaaagagcttcttaaatggaactatttctgtcaatatgactacaaactctaatttaacggagatatatgtatcctttgatacatattcataaagatgtagactgagaacttaaatatatgataatatcag
|||||||||||| ||||| || ||||||||||| ||||||||  | |||||||| ||||| || |||||||| ||||| ||||| |||||||||      || || ||   |   |   |    |  |   |   ||   | |||    |   ||| |||      |||| | | |  |                                                                      
GATTTTGCTTACCTCAACCTCGGAGGTATATGGAGATCCTCTCATTCATCCCCAGCCTGAGAGCTATTGGGGAAATGTCAACCCAATTGgtaggagtaaacactt-atcagcttttaattctcaacttatctgcgtg--tcaattcacattcttataact-tggtttctattatgatag----------------------------------------------------------------------

upper sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 7
GATTTTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtaggttccttcatttcattctcaacttgctaaagagcttcttaaatggaactatttctgtcaatatgactacaaactctaatttaacggagatatatgtatcctttgatacatattcataaagatgtagactgagaacttaaatatatgataatatcag
||| |||||||||||||||||||| |||||||| |||||||||| |||||||||| |||| || |||||||| ||||||||||| || ||||  | | |   ||||||  |   |||      |   ||  |  |   ||  |     |  || |  |  | | |    || |     || | || | |||                                                          
GATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcatc--tttcatggttttcttaggtttgttttttatttaaaaaaaaaaaaaggaaaagaaaagaaaagaaggaaaataggatgaaaaatctctat----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406393|gb|EV276208.1|EV276208
EST:     TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG                         GAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCCGAGACATTGATGT
genomic: TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtaggttcct ... ataatatcagGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCCGAGACATTGATGT
EST: gi|151404362|gb|EV274172.1|EV274172
EST:     TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG                         GAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCCGAGACATTGATGT
genomic: TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtaggttcct ... ataatatcagGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCCGAGACATTGATGT
EST: gi|213590294|gb|DB963857.1|DB963857
EST:     TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG                         GAGTTCGTAGTTGCTATGATGAGGGGAAACGGG
genomic: TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtaggttcct ... ataatatcagGAGTTCGTAGTTGCTATGATGAGGGGAAACGGG
EST: gi|19052776|gb|BM731443.1|BM731443
EST:     TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTG                         GAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGT
genomic: TCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGgtaggttcct ... ataatatcagGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCCGAGACATTGATGT