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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTGTGAGGGTACAGGTCGTCCTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACTTGCGCGATATAGTCTCAGGATTAACATATCTCCATGCTCATgtattatctctgagccaaatctttttctggttaatgatgatacagtgcccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn...

Basic information

species Glycine max
transcript GLYMA13G40190.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396529|gb|AI495526.1|AI495526
EST:     GGAAATACTTGCGCGATATAGTCTCAGGATTAACATATCTCCATGCTCAT                         AATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCATCAT
genomic: GGAAATACTTGCGCGATATAGTCTCAGGATTAACATATCTCCATGCTCATgtattatctc ... ttcaatgcagAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCATCAT
EST: gi|10231862|gb|BE800750.1|BE800750
EST:     GGAAATACTTGCGCGATATAGTCTCAGGATTAACATATCTCCATGCTCAT                         AATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCATCAT
genomic: GGAAATACTTGCGCGATATAGTCTCAGGATTAACATATCTCCATGCTCATgtattatctc ... ttcaatgcagAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCATCAT
EST: gi|21256986|gb|BQ453874.1|BQ453874
EST:     GGAAATACTTGCGCGATATAGTCTCAGGATTAACATATCTCCATGCTCAT                         AATATAGTGCATGGTGATATAAAACCTGATAATCTGTTGATTACTCATCAT
genomic: GGAAATACTTGCGCGATATAGTCTCAGGATTAACATATCTCCATGCTCATgtattatctc ... ttcaatgcagAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCATCAT