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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATGGTATTGAGGCACTTTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttgattttttacttgaactggaatactagattctagaaatagtaatgtatgcatctattttctcatttgatttctggcattaatttttgacctg...

Basic information

species Glycine max
transcript GLYMA13G35590.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g67134.1 (Oryza sativa), 5'ss of exon 8
CTGATGGTATTGAGGCACTTTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttgattttttacttgaactggaatactagattctagaaatagtaatgtatgcatctattttctcatttgatttctggcattaatttttgacctg-
||||||| || || ||||| ||||||||||| ||||||||||||||||||||||||||  |    |||||    ||| ||   |||  |   ||||||||||| |              ||||   |  |  |   |||| |||| | || |       || || |     | | |   ||  | |  || |||| |    
CTGATGGCATGGAAGCACTGTACAAGAAGGTCCATGCTGCCATCCGTGCTGATCCTACCATGGCCAAATCAACCAAGAAGGAACCGGCGACCCACAAGAGgtaca--------------tgaatctggctgatgatttctggaaagattatttgtgatgtccatgtatgattgtaa---ctaacttgcatctttgtctcag

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 5'ss of exon 8
CTGATGGTATTGAGGCACTTTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttgattttttacttgaactggaatactagattctagaaatagtaatgt-atgcatctattttctcatttgatttctggcattaatttttgacctg
||||||| || ||  |||| ||||||||||| |||||||||||||| || ||||||||  |    |||||    ||| ||   |||      ||||||||||| | |    |   |  |     | | | |    |||   ||  |     | | ||| | |||  ||  ||| |  || |||                  
CTGATGGCATGGAATCACTGTACAAGAAGGTCCATGCTGCCATCCGCGCCGATCCTACCATGGCCAAATCGACCAAGAAGGAACCGGCTACCCACAAGAGgtatattaagctggctgatgattttcgtaaagattatttgtgatgtccatgtatgatgtaactaacttgccatctctttgctgcag---------------

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM5G815894_T03 (Zea mays), 5'ss of exon 8
CTGATGGTATTGAGGCACTTTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttgattttttacttgaactggaatactagattctagaaatagtaatgtatgcatctattttctcatttgatttctggcattaatttttgacctg
||||||  || || || || ||||||||||| |||||||||||||||||||||||| || |    || ||    |||||||| || ||||||||||||||||| ||| |    | |  ||    |  | ||   | |      |||  || | | ||| |||    |  | |    | |     ||| |           
CTGATGACATGGAAGCTCTGTACAAGAAGGTCCATGCTGCCATCCGTGCTGATCCTTCTGTGGTCAAGTCAACCAAGCAGCCACCAAAGGAGCACAAGAGgtatagtagccgctgtcttttttttatactat--ggtcaccataatcctattatttgc-tctgccctgacttcccttctgctctattcag----------

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G090738_T01 (Zea mays), 5'ss of exon 8
CTGATGGTATTGAGGCACTTTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttgattttttacttgaactggaatactagattctagaaatagtaatgtatgcatctattttctcatttgatttctggcattaatttttgacctg-------------------------
| ||||  || || || || ||||||||||| ||||| |||||||||||||||||||   |    || ||    |||  ||  || ||||||||||||||||| |    |  |      ||       || ||| ||  |  |  |   ||||| |    | | |  |||  | | |   |   | |  | || |  |||                         
CCGATGACATGGAAGCTCTGTACAAGAAGGTCCATGCGGCCATCCGTGCTGATCCTAGCATGGCCAAGTCAACAAAGGCGCAACCAAAGGAGCACAAGAGgtataccctacatcgc---tggctcatgattctatatagttcacgtctgaatgtgtctgaccactcactc--tagttccataataattttcttagcactgagccatgcacatccgtttatttaag

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 8
CTGATGGTATTGAGGCACTTTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttg--attttttacttgaa--ctggaatactagattctagaaatagtaatgtatgcatctattttctcatttgatttctggcattaatttttgacctg
||||||  || || || || ||||||||||| ||||||||||||||||| |||||| |  |    || ||    |||||||| || |||||||| |||||||| ||| |  | ||||||  |  |   |||   ||   || | |    | |   ||     | ||   ||||   |   |||| |                  
CTGATGAAATAGAAGCGCTGTACAAGAAGGTCCATGCTGCCATCCGTGCCGATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagctactttttatatatagtttggtcgacataatccaatcgtttgctctgccctgacctgccttctgcgt--gtttcag------------------

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 5'ss of exon 8
CTGATGGTATTGAGGCACTTTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttgattttttacttgaactggaatactagattctagaaatagtaatgtatgcatctattttctcatttgatttctggcattaatttttgacctg----
| ||||  |||||||   | |||||||||||||||||||||||||||||  | || | ||  | |||   ||| |||||||| ||||| ||||||||||||| | | |||  ||  | |    ||    |  |  ||||       | | || |||||   ||| |     ||   |   |  ||||  |||||   ||     
CAGATGACATTGAGGAGATGTACAAGAAGGTTCATGCTGCCATCCGTGCAAACCCAATTCAAAAGAAGGTTGAGAAGCAGCCACCGAAAGAGCACAAGAGgtgaggctgagattaaattgattct---tttttctattcggttggcatttat-tatgctattatctgtaggttgtttaattaccatttgtttttattcttctat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208136512|gb|GD934110.1|GD934110
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGG
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGG
EST: gi|213611366|gb|DB975053.1|DB975053
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|208268599|gb|GE072520.1|GE072520
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193618408|gb|FK572546.1|FK572546
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|208266070|gb|GE063579.1|GE063579
EST:     CTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: CTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193650790|gb|FK600351.1|FK600351
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGG
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGG
EST: gi|207783476|gb|GD758822.1|GD758822
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|254322422|gb|GR837836.1|GR837836
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|6916526|gb|AW398056.1|AW398056
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193558859|gb|FK516624.1|FK516624
EST:     ATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAACGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: ATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAA-GGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193696469|gb|FK639319.1|FK639319
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAA
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAA
EST: gi|193604484|gb|FK559449.1|FK559449
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|5753460|gb|AI960747.1|AI960747
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|207775866|gb|GD748641.1|GD748641
EST:     AAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: AAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|208296073|gb|GE093135.1|GE093135
EST:     GATCCTACTCTCAGGGAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGTTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193496703|gb|FK459069.1|FK459069
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193593616|gb|FK546666.1|FK546666
EST:     GATCCTACTCTCAGGGAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|254332684|gb|GR844054.1|GR844054
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193526698|gb|FK485862.1|FK485862
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGA
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGA
EST: gi|10231807|gb|BE800695.1|BE800695
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|14011657|gb|BG726579.1|BG726579
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|207793967|gb|GD766181.1|GD766181
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|23733244|gb|BU764809.1|BU764809
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|207834892|gb|GD809061.1|GD809061
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGT
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGT
EST: gi|208305755|gb|GE104016.1|GE104016
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|208058242|gb|GD860247.1|GD860247
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGA
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGA
EST: gi|254322421|gb|GR837835.1|GR837835
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|254331588|gb|GR846005.1|GR846005
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|207745190|gb|GD714480.1|GD714480
EST:     AGGAAATCTGATAAGCACG-CCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: AGGAAATCTGATAAGCA-GCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|208314206|gb|GE116902.1|GE116902
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|38192160|gb|CF921366.1|CF921366
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193645678|gb|FK588294.1|FK588294
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|208098250|gb|GD892235.1|GD892235
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193339200|gb|FK303483.1|FK303483
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193642699|gb|FK591577.1|FK591577
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|31311906|gb|CD397109.1|CD397109
EST:     GATCCTACTCTCAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193531068|gb|FK484103.1|FK484103
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAAACATGAAGAAGCTGA
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAA-CATGAAGAAGCTGA
EST: gi|120496690|gb|EH224857.1|EH224857
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|192298911|gb|FG987656.1|FG987656
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193706181|gb|FK647597.1|FK647597
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|213594840|gb|DB975518.1|DB975518
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|7042116|gb|AW472010.1|AW472010
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|208272617|gb|GE067943.1|GE067943
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193715439|gb|FK651122.1|FK651122
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATAGAAGAAGCTGA
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACAT-GAAGAAGCTGA
EST: gi|193304590|gb|FK272635.1|FK272635
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|254319373|gb|GR828993.1|GR828993
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193549268|gb|FK507075.1|FK507075
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGGAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|208057299|gb|GD850876.1|GD850876
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|208096342|gb|GD893757.1|GD893757
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACCAGAG                         GTACAACATGAAGAAGCTGACTTATGAAGGAAGAAGGAAGGCTAAGTTGGT
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGA-GGA-GA-GGAAGGCTAAGTTGGT
EST: gi|208137530|gb|GD938040.1|GD938040
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|193675406|gb|FK616480.1|FK616480
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGA
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGA
EST: gi|209711828|gb|BW674088.1|BW674088
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|7147355|gb|AW509277.1|AW509277
EST:     GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC
EST: gi|207728683|gb|GD708651.1|GD708651
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... ctttctgcagGTACAACATGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGGTTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGATGGTATTGAGGCACTTTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTACTCTCAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtaaagttgattttttacttgaactggaatactagattctagaaatagtaatgtatgcatctattttctcatttgatttctggcattaatttttgacctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA