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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATACAAATCCATTTGGAACACTTCCTGCGTTGCCTCAGATGTCAATTGGTCGAGTTGGAACCACTCCTTCAATTCAATATGGAATCTCTAGCATGCCTgtaaatgctctctctcttggttttaacttttgattttgttgatttttatcctggttttgtttaaactcaagacagaaattatttaatattttgtccatccaaactatcagcaacgtttgagtagtttgagtttcaataaagctaatggcttcaatatgacacctcatttcag

Basic information

species Glycine max
transcript GLYMA13G33910.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G33910.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0025g03150.t01 (Vitis vinifera), 5'ss of exon 7
GAATACAAATCCATTTGGAACACTTCCTGCGTTGCCTCAGATGTCAATTGGTCGAGTTGGAACCACTCCTTCAATTCAATATGGAATCTCTAGCATGCCTgtaaatgctctctctcttggttttaacttttgattttgttgatttttatcctggttttgtttaaactcaagacagaaattatttaatattt----tgtccatccaaactatca-gcaacgtttgagtagtttgagtt-tcaataaagcta--atggcttcaatatgacacctcatttcag-----------------
     ||||||| |||||||| || |||||  ||||||| ||||| ||||||||   ||||||  | ||||| ||||||||||| || ||||||||||||||||||    ||| || ||    |   |||   |  | | ||  |||    |||||  ||||    |     ||    ||| | ||| |||    |  |  |    ||| | | |   | |||   ||  ||  | | | |  |||  |   |||   |  ||   | |  ||  | |                   
TGCAGCAAATCCTTTTGGAACTCTACCTGCAATGCCTCAAATGTCGATTGGTCGCACTGGAACTGCACCTTCTATTCAATATGGGATTTCTAGCATGCCTgtaaatatgatctgtcctgaaccttggtttatttgctttagaaatttgatttggttcagtttccttttttttcattg-ttaatcaatgtttatgatagcagttgctactcttatgtgccatttccttatattctgctgtgaggaaaaatgggatgaaatttattgtataaatctatccgatgatggctttgaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295400|gb|FG987014.1|FG987014
EST:     GTCGAGTTGGAACCACTCCTTCAATTCAATATGGAATCTCTAGCATGCCT                         GCTCTAGACAAACCTGCTCCTGTTAGAATATCCTCTTTATTGACATCTCGG
genomic: GTCGAGTTGGAACCACTCCTTCAATTCAATATGGAATCTCTAGCATGCCTgtaaatgctc ... ctcatttcagGCTCTAGACAAACCTGCTCCTGTTAGAATATCCTCTTTATTGACATCTCGG
EST: gi|7326572|gb|AW620370.1|AW620370
EST:     AACCACTCCTTCAATTCAATATGGAATCTCTAGCATGCCT                         GCTCTAGACAAACCTGCTCCTGTTAGAATATCCTCTTTATTGACATCTCGG
genomic: AACCACTCCTTCAATTCAATATGGAATCTCTAGCATGCCTgtaaatgctc ... ctcatttcagGCTCTAGACAAACCTGCTCCTGTTAGAATATCCTCTTTATTGACATCTCGG