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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATAAATCTTAAATCACTAGTAGATGCAGCTGAGAGTTATCAAATAGTTCTTGCAGAAAATCGAAAATTGTTCAATGAAGTTCAAGAATTAAAAGgtggcattatatgtgtttttctaacatgtaattgatgtgagttgattctgaattcatgtgaaacatttccaatacag

Basic information

species Glycine max
transcript GLYMA13G33390.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 12
GTATAAATCTTAAATCACTAGTAGATGCAGCTGAGAGTTATCAAATAGTTCTTGCAGAAAATCGAAAATTGTTCAATGAAGTTCAAGAATTAAAAGgtggc--attatatgtgtttttctaacatgtaattgatgtgagttgattctgaattca-tgtgaaacatttccaatacag
|      | | || |   | || ||||| ||||| |  || || | ||||||||| ||||||| ||| |||||||||||||| |||||| ||||||||     | |       |||||   |  |  |           |||||    | |||| | |    |  ||  |      
GCTCTGGTTTAAAGTGTTTGGTTGATGCTGCTGAAAACTACCACAAAGTTCTTGCTGAAAATCAAAAGTTGTTCAATGAAGTGCAAGAACTAAAAGgttttttactgctcaaattttttatagcttcagaatgcacctattgatgtccatttcaatatctgcctcttttag-----