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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGATTAGTTTCTCAACTGTCAGGGACAAACTTTTGTCCAGGGTGGATTTTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatgttttatttcgttcgtgtaaaatgatctcagaccagaggcttcttgtaatacaatatgattgatctataatatatatatatatatatatatata...

Basic information

species Glycine max
transcript GLYMA13G31260.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31260.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G28240.1 (Arabidopsis thaliana), 5'ss of exon 8
CCAGATTAGTTTCTCAACTGTCAGGGACAAACTTTTGTCCAGGGTGGATTTTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatgttttatttcgttcgtgtaaaatgatctcagaccagaggcttcttgtaatacaata-tgattgatctataatatatatatat---atatatatatata-
 || || ||||||||||| || || || ||  |     | |      | |      |   ||||||| | ||||||||||||||||| |||||||||||||| | | |||  | || | |   | |  |   || | |  ||||     | |||| |  ||  ||| |     || |    | | |||   |     | ||  | 
TCAAATCAGTTTCTCAACAGTAAGAGATAAGATCGCAGCAAAAACAAACTGGACAGTAAGCATGTTCCTTGATTGTGAAAGACGCAATTTTGTAGTTCAGgtgattttttcgtctcatgc---tgacttagcctaaaagtagag----ttagtaaaaagatcctgactctatcattacccgtttgtatcgaactctcaaatgcag

upper sequence: GLYMA13G31260.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0265g00120.t01 (Vitis vinifera), 5'ss of exon 8
CCAGATTAGTTTCTCAACTGTCAGGGACAAACTTTTGTCCAGGGTGGATTTTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatgttttatttcgttcgt-gtaaaatgatctcagaccagaggcttcttgtaatacaatatgattgatctataatatatatatatatatatatatata-
 || || ||||| || || || || || ||  ||    | | |    |||      |    ||||| ||||| |||||||| || |||||||||||||||||||   ||||||   | |  | |     |  | | |||  |||   |   ||||  | |    | ||  |  |  |     ||   ||  || | || || 
TCAAATAAGTTTTTCCACCGTAAGAGATAAGATTAGAGCAAAGACAAATTGGACCGTCAATATGTTTTTGGACTGTGAAAGGCGTAACTTTGTAGTTCAGgtaatcattttatcctggttatagctttgttcttttagaa-agaaaatcactgtagaaaaggcaggttctttgaggaggggcattgctaagtaga-atttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58025097|gb|CX711838.1|CX711838
EST:     TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAG                         AAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCT
genomic: TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatgttt ... ttgcatacagAAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCT
EST: gi|298192115|gb|HO036197.1|HO036197
EST:     TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAG                         AAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCT
genomic: TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatgttt ... ttgcatacagAAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCT
EST: gi|298168719|gb|HO009649.1|HO009649
EST:     TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAG                         AAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCT
genomic: TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatgttt ... ttgcatacagAAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCT