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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtatataattttatctactttcagacaattggtttttctgatgattaaaatgtaattagcatgaaatgatgaaaacattcctggacattctaacacatcaaaattctgtgtag

Basic information

species Glycine max
transcript GLYMA13G30060.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G30060.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 5'ss of exon 9
GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgta----tataattttatctactttcagaca-----------at------tggtttttctgatgatt---aaaatgtaattagcatgaaatgatgaaaacattcctggacattctaacacatcaaaattctgtgtag-----------------------------------------------
|| ||||| ||||| || || |||||| |||| || ||||| || || || |  || ||||||||||||||||||||||| ||||| ||||||||||||    || ||| ||||| |  || || ||           ||      | ||||    ||  | |   ||||||||  | |  | |  |     ||    | |||||||    |   | | | ||| |  ||||                                                
GTTCTTGGTACACCAACCCGTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGgtaagcatacaatcttatccatgttgagtcatatatcacgtcatcttttatagtttcctggacaactatgaaaatgtagctgggctcatttccaataatagattctggacaccagatagctttacaatgcaatgtataaataaggaggtgcatacaggtactgatttttctaacttctgcgtag

upper sequence: GLYMA13G30060.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtatata--------attttatctactttcaga-caattggtttttctga-tgattaaaatgtaattagcatgaaatgatgaaaacattcctggacattctaacacatca------aaattctgtgtag-------------------------------------------------------------------------
|| ||||| || || || || |||||  |||| || ||||||||||| || | ||| || |||||||| |||||||| || || ||||||||||||||||  |        ||  | | |   |||| | | |||     || |   ||     | |||| || | || |  ||  |   ||| |||   |  || | | |   |       || || | || ||                                                                         
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagtt-gtat-acttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag

upper sequence: GLYMA13G30060.2 (Glycine max), 5'ss of exon 9
lower sequence: AT4G18710.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtatataattttatctactttcagacaattggtttttctgatgattaaaatgtaattagcatgaaatgatgaaaacattcctggacattctaacacatcaaaattctgtgtag
|| ||||| ||||| |||||||| ||| | || |||||||||||  ||||||  || || ||||||||||||||||| ||||| || ||||||||||| ||   | || |||  |||   |    |  || ||    |   |    |  |   | ||    || || |  || ||   |   |                          
GTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTACACAGATTTCAGGTTTCCACAGATAAAGGCACATCCCTGGCACAAGgt-tagtgtcttttctctttttgcatgtgttcttgtttcagtttctttc-ttcacacatcaactgatcataattacgttttggtttag-------------------------

upper sequence: GLYMA13G30060.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 9
GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtatataattttatctactttcagacaattg--gtttt-tctgatgattaaaatgtaattagcatgaaatgatgaaaacattcctggacattctaacacatcaaaattctgtgtag
|| ||||| ||||| || || || ||| | |||||||||||||| | ||| | ||| ||||||||||||||||||||||||||||| ||||||||||| |  | |||||| || || |     ||||  ||||| || | | || | ||  ||  |   |  |  | || | ||| |    |  |||| ||  |  |  |            
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgca-ttttatttatttcccctttattgtggttttgtcagttaataacaacatagatgagaccagttaataacaacgta---gatcattatattatctata------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15199982|gb|BI424109.1|BI424109
EST:     TGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT
genomic: TGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtatataatt ... ttctgtgtagATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT
EST: gi|14991336|gb|BI317009.1|BI317009
EST:     ATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT
genomic: ATAAAAGCACACCCATGGCACAAGgtatataatt ... ttctgtgtagATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTT