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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGTGGCAGCTCTTTATGATGGTAAAATTCTATTTATATTTGGAGGAGCATCAAAATCCAGGACCTTGAATGACTTGTATTCACTTGACTTTGAAACAgtgagctctctatatcagtgaaacttttttatttctccaaaatgaagattaaatgctcattcattgtgtaatttaatgaaagtatattttctttcag

Basic information

species Glycine max
transcript GLYMA13G28760.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28760.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g43590.4 (Oryza sativa), 5'ss of exon 10
CCATGTGGCAGCTCTTTATGATGGTAAAATTCTATTTATATTTGGAGGAGCATCAAAATCCAGGACCTTGAATGACTTGTATTCACTTGACTTTGAAACAgtgagctctct---atatcagtgaaacttttttatttctccaaaatgaagattaaatgctcattcattgtgtaatttaatgaaagtatattttctttcag
 |||||||| ||||| ||||||| || ||||||||| || ||||||||   |||||||||||  ||  | |||||  |  || | || ||||| ||||| || |  ||| |    | ||  || |  |||||  | |        | |   | |||    ||||| |  ||| |                          
TCATGTGGCTGCTCTGTATGATGATAGAATTCTATTGATCTTTGGAGGCCAATCAAAATCCAAAACACTCAATGATGTTCATGCTCTAGACTTCGAAACGgtaatttctatcgggtttccttgtaggtttttcttgttgatgcgcttac--tgaaaaaaccattcttcttgttag-------------------------

upper sequence: GLYMA13G28760.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 10
CCATGTGGCAGCTCTTTATGATGGTAAAATTCTATTTATATTTGGAGGAGCATCAAAATCCAGGACCTTGAATGACTTGTATTCACTTGACTTTGAAACAgt-----gagc---------tctctatatcagtg--aaacttttttatttctccaa-aatgaaga-ttaaatgctcattcattgtgtaatttaatgaaagtatattttctttcag
 |||||||||||||| ||||||| ||||||||| ||||| || ||||||| ||||||||| |||||  ||||||||||||| || |||||||||||||| ||     ||||         |||  |  | | ||  ||||   |||||||||  ||  ||||| | ||| ||  |||||  |||   | ||| ||    | || |||| | ||||
TCATGTGGCAGCTCTCTATGATGATAAAATTCTTTTTATTTTCGGAGGAGGATCAAAATCTAGGACTCTGAATGACTTGTACTCTCTTGACTTTGAAACGgtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttg---attttgatatgtggat-ttttgtctcag