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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttaatgttaatctggcacataattgtcattttcattttctatgtatatcaag

Basic information

species Glycine max
transcript GLYMA13G28720.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttaatgttaatctggcacataattgtcattttcattt-tctatgtatatcaag----
  |  |||| ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||||||  | || ||||| | | | | |||  ||   || |   |||       |  |  |||| ||| ||| |  ||     ||||||  | ||  |   || |     
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataac--tcccatgctcaatggctcattatgctaataatttgggaca-acctgcatagttcattcatgtaaattcttctatgaag

upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttaatgttaatctggcacataattgtcattttcattttctatgtatatcaag
  |  |||| ||||| ||||| |||||||| ||||||||||| ||||| |||||||| || |||||||| ||||| || |||||||| ||  | || |||||||   |    |  | | | |  |   | ||  |   | |||||  | |  |   || |  |   | | |  |  ||    |   |||
CTTGTTGCCTGAAATATTTAGCTCTGCTGAGACTTTTGATGATTGGTTCCAAATCTCAGGGGAAAATGATCAACATGAAGTTGTTCAGCAGCTTCATAAGgtaacagatttgatatccatattctcaattga--tagatcatgttggttttccttgta-tgatttgtgtaacatgttacacttg--aag

upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 8
lower sequence: AC235535.1_FGT001 (Zea mays), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttc-ttttgattgttggaagtccttaatgttaatctggcacataattgtcattttcattttctatgtatatcaag
  | || || ||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| || || ||  | || |||||     | | ||   || |  | | |  |   ||| ||| |   | | ||   | ||||||||   || ||  || |    |       
CTTGCTCCCTGAAATATTTAGCTCTGCGGAAACCTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAACAGGAGGTGGTCCAGCAGCTTCATAAGgttggg-atataattatcatgataactaattatagtactttaaaatgaactctta-ataattgtttcttgcaacttttgcaaag------

upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 5
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgt-aaattacagaaccttcttttgattgttggaagtccttaatgttaatctggcacataattgtcattttcattttctatgtatatcaag
  | || || ||||| ||||| ||||| || || |||||||||||||||||||| ||||| |||||||| ||||||||||| || || ||  | || |||||     || ||         |      ||  |   ||||||  | ||        ||||||||   |  ||  || |    |       
CTTGCTACCTGAAATATTTAGCTCTGCGGAGACCTTTGATGAATGGTTTCAAATATCTGGGGAAAATGATCAACAGGAGGTGGTGCAGCAGCTTCATAAGgttgggatatagttttcgtgatcaccaattttagtaccttaaaatgaactc--tttataattgtttctcgcaacttttgcaaag------

upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttgg--aagtccttaatgttaatctggcacataattgtcattttcattttctatgtatatcaag
|||||| || ||  |||||||||| || ||||||||||| || ||||||||||| ||||||||||| ||||| || || |||||||||||| | |||||||||  |      |  || |   | || ||    |||| |||| || |||||    || | ||  |  |                       
TCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGTTTCAAATTTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGgtatgtactcatattttatcaaggttattctctaagttctta-tgctaatcatttacctcatctttgtag---------------------

upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttaatgttaatctggcacataattgtcattttcattttctatgtatatcaag
||||||||| || ||||||||||| || || ||||||||||||||||||||||| |||||||| |||||||| || || ||||| |||||| | |||||||||    |   | || |   |||    |||    |  |   | |   | ||   | ||   || | || | |||  | | | | |  ||
TCTTCTGCCTGAGATTTTTAGTTCAGCAGAGACTTTTGATGAATGGTTTCAAATTTCTGGTGAGAATGACCAGCAAGAAGTTGTGCAACAACTGCACAAGgtatgg-atgcacccattccttg--cattgagtttattctgt-tctgtgtgagtcgtag--gttaattgc-tttcatgtatctttttag

upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttaatgttaatctggcacataattgtcattttcattttctatgtatatcaag
||| |||||||| || |||| ||| ||||| ||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||||||  | || ||||||||   ||  |||| ||  |  || || |   | | | || || ||||     |      |  |||   | ||   ||| | | |  
TCTACTGCCCGAGATATTTAATTCAGCTGAGACTTTTGATGAATGGTTCCAAATTTCTGGAGATAATGACCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtaaacc-caagacctcctaat--tttttagctctaccttat-ttcatctcatttactgaaatggtttctgtatttc-tgttttttag-

upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ31365 (Selaginella moellendorffii), 5'ss of exon 8
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgtaaat-tacagaacct-tcttttgattgttggaagtccttaatgttaatctggcacataattgtcattttcattttctatgtatatcaag
||| ||||||||||| ||||| |||||||| || ||||| || |||||||| || ||||| |||||||| || ||||||||  |||| ||| | |||||||||  | | ||| |  | |   |  |   |  | |   |||  | | |                                           
TCTCCTGCCCGAAATCTTTAGCTCTGCTGAGACCTTTGACGAGTGGTTTCAGATTTCTGGAGAAAATGATCAGCAGGAGGTCATTCAGCAACTTCACAAGgtacttatccagcatttataaatcaaccatgagtaacactttttctcag------------------------------------------

upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ32950 (Selaginella moellendorffii), 5'ss of exon 7
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttaatgttaatctggcacataattgtcattttcattttctatgtatatcaag
||| ||||| || ||||| || ||||||||||| || || |||||||||||||| ||||| ||||| ||||| || || ||||| || ||  | |||||||||      ||  |  |    | || || | | |    ||||| |   | |                                      
TCTGCTGCCGGAGATTTTCAGCTCTGCTGAAACATTCGACGAATGGTTTCAAATATCTGGCGAAAACGACCAGCAAGAAGTTGTGCAGCAGCTTCACAAGgtatgaatgagcgctatgcgct-atcgtcg-atgctgataatgatttacag--------------------------------------

upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ15818 (Selaginella moellendorffii), 5'ss of exon 7
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttaatgttaatctggcacataattgtcattttcattttctatgtatatcaag
||| ||||| || ||||| || ||||||||||| || || |||||||||||||| ||||| ||||| ||||| || || ||||| || ||  | |||||||||      ||  |  |    | || || | | |    ||||| |  |   |                                     
TCTGCTGCCGGAGATTTTCAGCTCTGCTGAAACATTCGACGAATGGTTTCAAATATCTGGCGAAAACGACCAGCAAGAAGTTGTGCAGCAGCTTCACAAGgtatgaatgagcgctatgcgct-atcgtcg-atgctgataatgattttacag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345542|gb|GR851704.1|GR851704
EST:     AAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAG                         GTCCTCCGCCCATTTCTCCTTTCGAAGGTTGAAGTCAGATGTTGAGAAAGG
genomic: AAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattaca ... gtatatcaagGTCCTCCGCCCATTTCTCC-TTCGAAGGTTGAAGTCAGATGTTGAGAAAGG